- A
- AA (OpenMS)
- AAIndex (OpenMS)
- AASequence (OpenMS)
- OPXLDataStructs::AASeqWithMass (OpenMS)
- OPXLDataStructs::AASeqWithMassComparator (OpenMS)
- FuzzyStringComparator::AbortComparison (OpenMS)
- AbsoluteQuantitation (OpenMS)
- AbsoluteQuantitationMethod (OpenMS)
- AbsoluteQuantitationMethodFile (OpenMS)
- AbsoluteQuantitationStandards (OpenMS)
- AbsoluteQuantitationStandardsFile (OpenMS)
- SiriusMSFile::AccessionInfo (OpenMS)
- AccurateMassSearchEngine (OpenMS)
- AccurateMassSearchResult (OpenMS)
- ACNode (OpenMS)
- Acquisition (OpenMS)
- AcquisitionInfo (OpenMS)
- AcquisitionInfoVisualizer (OpenMS)
- AcquisitionVisualizer (OpenMS)
- AcqusHandler (OpenMS::Internal)
- ACSpawn (OpenMS)
- TOPPViewMenu::ActionRequirement_ (OpenMS)
- ACTrie (OpenMS)
- ACTrieState (OpenMS)
- Adduct (OpenMS)
- AdductCompare (OpenMS::IdentificationDataInternal)
- AdductInfo (OpenMS)
- TriqlerFile::AggregatedConsensusInfo (OpenMS)
- MSstatsFile::AggregatedConsensusInfo (OpenMS)
- always_true (KDTree)
- PepXMLFile::AminoAcidModification (OpenMS)
- MzIdentMLDOMHandler::AnalysisSoftware (OpenMS::Internal)
- NucleicAcidSearchEngine::AnnotatedHit
- SimpleSearchEngineAlgorithm::AnnotatedHit_ (OpenMS)
- Annotation1DCaret (OpenMS)
- Annotation1DDistanceItem (OpenMS)
- Annotation1DItem (OpenMS)
- Annotation1DPeakItem (OpenMS)
- Annotation1DTextItem (OpenMS)
- Annotation1DVerticalLineItem (OpenMS)
- Annotations1DContainer (OpenMS)
- AnnotationStatistics (OpenMS)
- MassTraceDetection::Apex (OpenMS)
- AppliedProcessingStep (OpenMS::IdentificationDataInternal)
- Area (OpenMS)
- AreaIterator (OpenMS::Internal)
- Args (OpenMS::Internal)
- AScore (OpenMS)
- QcMLFile::Attachment (OpenMS)
- AverageLinkage (OpenMS)
- AxisPainter (OpenMS)
- AxisTickCalculator (OpenMS)
- AxisWidget (OpenMS)
- B
- Base64 (OpenMS)
- BaseException (OpenMS::Exception)
- BaseFeature (OpenMS)
- BaseGroupFinder (OpenMS)
- BaseModel (OpenMS)
- BaseSuperimposer (OpenMS)
- BaseVisualizer (OpenMS)
- BaseVisualizerGUI (OpenMS)
- BasicProteinInferenceAlgorithm (OpenMS)
- BasicStatistics (OpenMS::Math)
- BayesianProteinInferenceAlgorithm (OpenMS)
- BiGaussFitter1D (OpenMS)
- BiGaussModel (OpenMS)
- BilinearInterpolation (OpenMS::Math)
- MzMLHandlerHelper::BinaryData (OpenMS::Internal)
- BinaryDataArray (OpenMS::Interfaces)
- BinaryTreeNode (OpenMS)
- BinnedSharedPeakCount (OpenMS)
- BinnedSpectralContrastAngle (OpenMS)
- BinnedSpectrum (OpenMS)
- TargetedSpectraExtractor::BinnedSpectrumComparator (OpenMS)
- BinnedSpectrumCompareFunctor (OpenMS)
- BinnedSumAgreeingIntensities (OpenMS)
- BK_PrecPolicy (OpenMS::StringConversions)
- BSpline (eol_bspline)
- BSpline2d (OpenMS)
- BufferOverflow (OpenMS::Exception)
- QTCluster::BulkData (OpenMS)
- Bzip2Ifstream (OpenMS)
- Bzip2InputStream (OpenMS)
- C
- CachedmzML (OpenMS)
- CachedMzMLHandler (OpenMS::Internal)
- CachedSwathFileConsumer (OpenMS)
- InternalCalibration::CalibrantStats_ (OpenMS)
- CalibrationData (OpenMS)
- ItraqConstants::ChannelInfo (OpenMS)
- IsotopeCluster::ChargedIndexSet (OpenMS)
- ChargePair (OpenMS)
- TheoreticalSpectrumGenerationDialog::CheckBox (OpenMS)
- Chromatogram (OpenMS::Interfaces)
- MzMLHandler::ChromatogramData (OpenMS::Internal)
- ChromatogramExtractor (OpenMS)
- ChromatogramExtractorAlgorithm (OpenMS)
- ChromatogramMeta (OpenMS::Interfaces)
- ChromatogramPeak (OpenMS)
- ChromatogramSettings (OpenMS)
- ChromatogramTools (OpenMS)
- ChromeleonFile (OpenMS)
- ChromExtractParams (OpenMS)
- MSSpectrum::Chunk (OpenMS)
- MSSpectrum::Chunks (OpenMS)
- Citation (OpenMS)
- OPXLDataStructs::CLSMScoreComparator (OpenMS)
- ClusterAnalyzer (OpenMS)
- ClusterFunctor (OpenMS)
- ClusterHierarchical (OpenMS)
- ClusteringGrid (OpenMS)
- ClusterProxyKD (OpenMS)
- MzTab::CMMzTabStream (OpenMS)
- CmpHypothesesByScore (OpenMS)
- CmpMassTraceByMZ (OpenMS)
- CoarseIsotopePatternGenerator (OpenMS)
- ColorBrewer (OpenMS::GUIHelpers)
- Colorizer (OpenMS)
- ColorSelector (OpenMS)
- Colorizer::ColorWithUndo_ (OpenMS)
- ConsensusMap::ColumnHeader (OpenMS)
- Command (OpenMS::Internal)
- TargetedSpectraExtractor::Comparator (OpenMS)
- AccurateMassSearchEngine::CompareEntryAndMass_ (OpenMS)
- CompareMzTabMMatchRef (OpenMS)
- CompleteLinkage (OpenMS)
- Compomer (OpenMS)
- MRMFeatureQC::ComponentGroupPairQCs (OpenMS)
- MRMFeaturePicker::ComponentGroupParams (OpenMS)
- MRMFeatureQC::ComponentGroupQCs (OpenMS)
- MRMFeaturePicker::ComponentParams (OpenMS)
- MRMFeatureQC::ComponentQCs (OpenMS)
- Compound (OpenMS::TargetedExperimentHelper)
- SiriusMSFile::CompoundInfo (OpenMS)
- MetaboTargetedAssay::CompoundSpectrumPair (OpenMS)
- MetaboTargetedAssay::CompoundTargetDecoyPair (OpenMS)
- CompressedInputSource (OpenMS)
- ConfidenceScoring (OpenMS)
- Configuration (OpenMS::TargetedExperimentHelper)
- ConnectedComponent (OpenMS)
- ConsensusFeature (OpenMS)
- ConsensusIDAlgorithm (OpenMS)
- ConsensusIDAlgorithmAverage (OpenMS)
- ConsensusIDAlgorithmBest (OpenMS)
- ConsensusIDAlgorithmIdentity (OpenMS)
- ConsensusIDAlgorithmPEPIons (OpenMS)
- ConsensusIDAlgorithmPEPMatrix (OpenMS)
- ConsensusIDAlgorithmRanks (OpenMS)
- ConsensusIDAlgorithmSimilarity (OpenMS)
- ConsensusIDAlgorithmWorst (OpenMS)
- ConsensusMap (OpenMS)
- ConsensusMapMergerAlgorithm (OpenMS)
- ConsensusMapNormalizerAlgorithmMedian (OpenMS)
- ConsensusMapNormalizerAlgorithmQuantile (OpenMS)
- ConsensusMapNormalizerAlgorithmThreshold (OpenMS)
- ConsensusXMLFile (OpenMS)
- ConsensusXMLHandler (OpenMS::Internal)
- ConsoleUtils (OpenMS)
- AASequence::ConstIterator (OpenMS)
- HashGrid::ConstIterator (OpenMS)
- NASequence::ConstIterator (OpenMS)
- ConstRefVector (OpenMS)
- ConstRefVector::ConstRefVectorConstIterator (OpenMS)
- ConstRefVector::ConstRefVectorIterator (OpenMS)
- Contact (OpenMS::TargetedExperimentHelper)
- ContactPerson (OpenMS)
- ContactPersonVisualizer (OpenMS)
- MSExperiment::ContainerAdd_ (OpenMS)
- MSExperiment::ContainerAdd_< ContainerValueType, false > (OpenMS)
- MSExperiment::ContainerAdd_< ContainerValueType, true > (OpenMS)
- Contaminants (OpenMS)
- Contaminants::ContaminantsSummary (OpenMS)
- ControlledVocabulary (OpenMS)
- ConversionError (OpenMS::Exception)
- ConvexHull2D (OpenMS)
- CrossLinksDB (OpenMS)
- OPXLDataStructs::CrossLinkSpectrumMatch (OpenMS)
- CsvFile (OpenMS)
- CSVWriter (OpenSwath)
- CubicSpline2d (OpenMS)
- CV (OpenMS::TargetedExperimentHelper)
- CVMappingFile (OpenMS)
- CVMappingRule (OpenMS)
- CVMappings (OpenMS)
- CVMappingTerm (OpenMS)
- CVReference (OpenMS)
- ControlledVocabulary::CVTerm (OpenMS)
- CVTerm (OpenMS)
- SemanticValidator::CVTerm (OpenMS::Internal)
- CVTermList (OpenMS)
- CVTermListInterface (OpenMS)
- D
- EmgFitter1D::Data (OpenMS)
- MzIdentMLDOMHandler::DatabaseInput (OpenMS::Internal)
- DataFilters::DataFilter (OpenMS)
- DataFilterDialog (OpenMS)
- DataFilters (OpenMS)
- DataMatrix (OpenSwath)
- TransformationModel::DataPoint (OpenMS)
- DataProcessing (OpenMS)
- DataProcessingVisualizer (OpenMS)
- DataSelectionTabs (OpenMS)
- DataTabBase (OpenMS)
- DataValue (OpenMS)
- Date (OpenMS)
- DateTime (OpenMS)
- DaTrait (OpenMS)
- DBoundingBox (OpenMS)
- DBSearchParam (OpenMS::IdentificationDataInternal)
- MzIdentMLDOMHandler::DBSequence (OpenMS::Internal)
- DBSuitability (OpenMS)
- DBSuitability_friend (OpenMS)
- DeconvolvedSpectrum (OpenMS)
- DecoyGenerator (OpenMS)
- DecoyHelper (OpenMS)
- DecoyHelper::DecoyStatistics (OpenMS)
- FalseDiscoveryRate::DecoyStringHelper (OpenMS)
- DefaultParamHandler (OpenMS)
- Deisotoper (OpenMS)
- MultiplexDeltaMasses::DeltaMass (OpenMS)
- DepletedIDPool (OpenMS::Exception)
- ACNode::DepthHits (OpenMS)
- IDBoostGraph::dfs_ccsplit_visitor (OpenMS::Internal)
- DiaPrescore (OpenMS)
- DIAScoring (OpenMS)
- DIATreeTab (OpenMS)
- Digestion (OpenMS)
- DigestionEnzyme (OpenMS)
- DigestionEnzymeDB (OpenMS)
- DigestionEnzymeProtein (OpenMS)
- DigestionEnzymeRNA (OpenMS)
- IDFilter::DigestionFilter (OpenMS)
- DigestionVisualizer (OpenMS)
- DimBase (OpenMS)
- DimIM (OpenMS)
- DimINT (OpenMS)
- DimMapper (OpenMS)
- DimMZ (OpenMS)
- DimRT (OpenMS)
- DIntervalBase (OpenMS::Internal)
- DistanceMatrix (OpenMS)
- FeatureDistance::DistanceParams_ (OpenMS)
- ColorBrewer::Distinct (OpenMS::GUIHelpers)
- DivisionByZero (OpenMS::Exception)
- DocumentIdentifier (OpenMS)
- DocumentIdentifierVisualizer (OpenMS)
- ListUtils::DoubleTolerancePredicate_ (OpenMS)
- DPeak (OpenMS)
- DPosition (OpenMS)
- DRange (OpenMS)
- DTA2DFile (OpenMS)
- DTAFile (OpenMS)
- E
- EDTAFile (OpenMS)
- EGHTraceFitter (OpenMS)
- EGHTraceFitter::EGHTraceFunctor (OpenMS)
- EmgFitter1D::EgmFitterFunctor (OpenMS)
- Element (OpenMS)
- QTCluster::Element (OpenMS)
- ElementDB (OpenMS)
- ElementNotFound (OpenMS::Exception)
- ElutionModelFitter (OpenMS)
- ElutionPeakDetection (OpenMS)
- EmgFitter1D (OpenMS)
- EmgGradientDescent (OpenMS)
- EmgGradientDescent_friend (OpenMS)
- EmgModel (OpenMS)
- EmgScoring (OpenMS)
- EmpiricalFormula (OpenMS)
- XMLHandler::EndParsingSoftly (OpenMS::Internal)
- EnhancedTabBar (OpenMS)
- EnhancedTabBarWidgetInterface (OpenMS)
- EnhancedWorkspace (OpenMS)
- EnzymaticDigestion (OpenMS)
- EuclideanSimilarity (OpenMS)
- ExperimentalDesign (OpenMS)
- ExperimentalDesignFile (OpenMS)
- ExperimentalSettings (OpenMS)
- ExperimentalSettingsVisualizer (OpenMS)
- ExposedVector (OpenMS)
- ExtendedIsotopeFitter1D (OpenMS)
- ExtendedIsotopeModel (OpenMS)
- ExternalProcess (OpenMS)
- ExternalProcessMBox (OpenMS)
- ChromatogramExtractorAlgorithm::ExtractionCoordinates (OpenMS)
- F
- FailedAPICall (OpenMS::Exception)
- FAIMSHelper (OpenMS)
- FakeProcess (OpenMS)
- FalseDiscoveryRate (OpenMS)
- FASTAContainer (OpenMS)
- FASTAContainer< TFI_File > (OpenMS)
- FASTAContainer< TFI_Vector > (OpenMS)
- FASTAFile::FASTAEntry (OpenMS)
- FASTAFile (OpenMS)
- Feature (OpenMS)
- FeatureFinderAlgorithmMetaboIdent::FeatureCompare (OpenMS)
- FeatureFinderIdentificationAlgorithm::FeatureCompare (OpenMS)
- AbsoluteQuantitationStandards::featureConcentration (OpenMS)
- FeatureDeconvolution (OpenMS)
- FeatureDistance (OpenMS)
- FeatureEditDialog (OpenMS)
- FeatureFileOptions (OpenMS)
- FeatureFinderIdentificationAlgorithm::FeatureFilterPeptides (OpenMS)
- FeatureFinderAlgorithmMetaboIdent::FeatureFilterQuality (OpenMS)
- FeatureFinderIdentificationAlgorithm::FeatureFilterQuality (OpenMS)
- FeatureFinderAlgorithm (OpenMS)
- FeatureFinderAlgorithmMetaboIdent (OpenMS)
- FeatureFinderAlgorithmPicked (OpenMS)
- FeatureFinderAlgorithmPickedHelperStructs (OpenMS)
- FeatureFinderDefs (OpenMS)
- FeatureFinderIdentificationAlgorithm (OpenMS)
- FeatureFinderAlgorithmMetaboIdent::FeatureFinderMetaboIdentCompound (OpenMS)
- FeatureFinderMultiplexAlgorithm (OpenMS)
- FeatureFindingMetabo (OpenMS)
- FeatureGroupingAlgorithm (OpenMS)
- FeatureGroupingAlgorithmKD (OpenMS)
- FeatureGroupingAlgorithmLabeled (OpenMS)
- FeatureGroupingAlgorithmQT (OpenMS)
- FeatureGroupingAlgorithmUnlabeled (OpenMS)
- FeatureHandle (OpenMS)
- FeatureHandle::FeatureHandleMutable_ (OpenMS)
- FeatureHypothesis (OpenMS)
- FeatureMap (OpenMS)
- FeatureMapping (OpenMS)
- FeatureMapping::FeatureMappingInfo (OpenMS)
- FeatureOpenMS (OpenMS)
- FeatureOverlapFilter (OpenMS)
- FeatureSummary (OpenMS)
- FeatureMapping::FeatureToMs2Indices (OpenMS)
- FeatureXMLFile (OpenMS)
- FeatureXMLHandler (OpenMS::Internal)
- FIAMSDataProcessor (OpenMS)
- FIAMSScheduler (OpenMS)
- FidHandler (OpenMS::Internal)
- File (OpenMS)
- FileEmpty (OpenMS::Exception)
- FileHandler (OpenMS)
- FileMapping (OpenMS::Internal)
- FileNameTooLong (OpenMS::Exception)
- FileNotFound (OpenMS::Exception)
- FileNotReadable (OpenMS::Exception)
- FileNotWritable (OpenMS::Exception)
- FileTypeList (OpenMS)
- FileTypes (OpenMS)
- FileWatcher (OpenMS)
- FilterableList (OpenMS::Internal)
- FileTypeList::FilterElements_ (OpenMS)
- FilterList (OpenMS::Internal)
- FineIsotopePatternGenerator (OpenMS)
- Fitter1D (OpenMS)
- FlagSet (OpenMS)
- FLASHDeconvAlgorithm (OpenMS)
- FLASHDeconvFeatureFile (OpenMS)
- FLASHDeconvHelperStructs (OpenMS)
- FLASHDeconvSpectrumFile (OpenMS)
- FLASHDeconvTabWidget (OpenMS::Internal)
- FLASHDeconvWizardBase (OpenMS)
- FloatDataArray (OpenMS::DataArrays)
- RNPxlFragmentAnnotationHelper::FragmentAnnotationDetail_ (OpenMS::Internal)
- FragmentMassError (OpenMS)
- FullSwathFileConsumer (OpenMS)
- FuzzyStringComparator (OpenMS)
- FWHM (OpenMS)
- G
- GammaDistributionFitter::GammaDistributionFitResult (OpenMS::Math)
- GammaDistributionFitter (OpenMS::Math)
- GaussFilter (OpenMS)
- GaussFilterAlgorithm (OpenMS)
- GaussFitter::GaussFitResult (OpenMS::Math)
- GaussFitter (OpenMS::Math)
- GaussFitter1D (OpenMS)
- SignalToNoiseEstimator::GaussianEstimate (OpenMS)
- GaussModel (OpenMS)
- GaussTraceFitter (OpenMS)
- GaussTraceFitter::GaussTraceFunctor (OpenMS)
- LevMarqFitter1D::GenericFunctor (OpenMS)
- TraceFitter::GenericFunctor (OpenMS)
- IDFilter::GetMatchingItems (OpenMS)
- IDBoostGraph::GetPosteriorVisitor (OpenMS::Internal)
- IDBoostGraph::GetScoreTgTVisitor (OpenMS::Internal)
- ConfidenceScoring::GLM_ (OpenMS)
- GlobalExceptionHandler (OpenMS::Exception)
- GNPSMetaValueFile (OpenMS)
- GNPSMGFFile (OpenMS)
- GNPSQuantificationFile (OpenMS)
- Gradient (OpenMS)
- GradientVisualizer (OpenMS)
- Gravitator (OpenMS)
- GridBasedCluster (OpenMS)
- GridBasedClustering (OpenMS)
- GridFeature (OpenMS)
- GridSearch (OpenMS)
- GUILock (OpenMS::GUIHelpers)
- GUIProgressLoggerImpl (OpenMS)
- GumbelDistributionFitter::GumbelDistributionFitResult (OpenMS::Math)
- GumbelMaxLikelihoodFitter::GumbelDistributionFitResult (OpenMS::Math)
- GumbelDistributionFitter (OpenMS::Math)
- GumbelMaxLikelihoodFitter (OpenMS::Math)
- GzipIfstream (OpenMS)
- GzipInputStream (OpenMS)
- H
- HasActivationMethod (OpenMS)
- IDFilter::HasDecoyAnnotation (OpenMS)
- IDFilter::HasGoodScore (OpenMS)
- hash< OpenMS::Index > (std)
- hash< OpenMS::String > (std)
- HashGrid (OpenMS)
- NucleicAcidSearchEngine::HasInvalidLength
- IDFilter::HasMatchingAccession (OpenMS)
- IDFilter::HasMatchingAccessionUnordered (OpenMS)
- IDFilter::HasMaxMetaValue (OpenMS)
- IDFilter::HasMaxRank (OpenMS)
- HasMetaValue (OpenMS)
- IDFilter::HasMetaValue (OpenMS)
- IDFilter::HasNoHits (OpenMS)
- HasPrecursorCharge (OpenMS)
- HasScanMode (OpenMS)
- HasScanPolarity (OpenMS)
- HDF5Connector (OpenMS)
- Histogram (OpenMS::Math)
- HistogramDialog (OpenMS)
- HistogramWidget (OpenMS)
- Hit (OpenMS)
- ConsensusIDAlgorithm::HitInfo (OpenMS)
- HPLC (OpenMS)
- HPLCVisualizer (OpenMS)
- HyperScore (OpenMS)
- I
- IBSpectraFile (OpenMS)
- IChromatogramsReader (OpenMS::Interfaces)
- IChromatogramsWriter (OpenMS::Interfaces)
- IDataFrameWriter (OpenSwath)
- IDBoostGraph (OpenMS::Internal)
- IDConflictResolverAlgorithm (OpenMS)
- IDDecoyProbability (OpenMS)
- Identification (OpenMS::Internal)
- IdentificationData (OpenMS)
- IdentificationDataConverter (OpenMS)
- IdentificationHit (OpenMS::Internal)
- Ms2IdentificationRate::IdentificationRateData (OpenMS)
- IDRipper::IdentificationRuns (OpenMS)
- IdentificationSummary (OpenMS)
- IdentifiedCompound (OpenMS::IdentificationDataInternal)
- IdentifiedMolecule (OpenMS::IdentificationDataInternal)
- IdentifiedSequence (OpenMS::IdentificationDataInternal)
- IDFilter (OpenMS)
- IDMapper (OpenMS)
- IDMergerAlgorithm (OpenMS)
- MzTab::IDMzTabStream (OpenMS)
- IDRipper (OpenMS)
- IDScoreGetterSetter (OpenMS)
- IDScoreSwitcherAlgorithm (OpenMS)
- IdXMLFile (OpenMS)
- IFeature (OpenSwath)
- IllegalArgument (OpenMS::Exception)
- IllegalPosition (OpenMS::Exception)
- IllegalSelfOperation (OpenMS::Exception)
- IllegalTreeOperation (OpenMS::Exception)
- ILPDCWrapper (OpenMS)
- IMDataConverter (OpenMS)
- MobilityPeak2D::IMLess (OpenMS)
- MSSpectrum::IMLess (OpenMS)
- IMRMFeature (OpenSwath)
- IMSAlphabet (OpenMS::ims)
- IMSAlphabetParser (OpenMS::ims)
- IMSAlphabetTextParser (OpenMS::ims)
- IMSDataConsumer (OpenMS::Interfaces)
- IMSElement (OpenMS::ims)
- IMSIsotopeDistribution (OpenMS::ims)
- IMTypes (OpenMS)
- IncludeExcludeTarget (OpenMS)
- IncompatibleIterators (OpenMS::Exception)
- IndentedStream (OpenMS)
- Index (OpenMS)
- IndexedMzMLDecoder (OpenMS)
- IndexedMzMLFileLoader (OpenMS)
- IndexedMzMLHandler (OpenMS::Internal)
- FeatureHandle::IndexLess (OpenMS)
- IndexOverflow (OpenMS::Exception)
- IndexUnderflow (OpenMS::Exception)
- INIFileEditorWindow (OpenMS)
- InIntensityRange (OpenMS)
- INIUpdater (OpenMS)
- InMSLevelRange (OpenMS)
- InMzRange (OpenMS)
- InPrecursorMZRange (OpenMS)
- InputFile (OpenMS::IdentificationDataInternal)
- InputFile (OpenMS)
- InputFileList (OpenMS::Internal)
- FuzzyStringComparator::InputLine (OpenMS)
- InRTRange (OpenMS)
- InspectInfile (OpenMS)
- InspectOutfile (OpenMS)
- Instrument (OpenMS)
- Instrument (OpenMS::TargetedExperimentHelper)
- InstrumentSettings (OpenMS)
- InstrumentSettingsVisualizer (OpenMS)
- InstrumentVisualizer (OpenMS)
- ClusterFunctor::InsufficientInput (OpenMS)
- IntegerDataArray (OpenMS::DataArrays)
- IntegerMassDecomposer (OpenMS::ims)
- IntensityIteratorWrapper (OpenMS::Internal)
- ChromatogramPeak::IntensityLess (OpenMS)
- Peak2D::IntensityLess (OpenMS)
- Peak1D::IntensityLess (OpenMS)
- MobilityPeak2D::IntensityLess (OpenMS)
- MobilityPeak1D::IntensityLess (OpenMS)
- InternalCalibration (OpenMS)
- InternalToolError (OpenMS::Exception)
- InterpolationModel (OpenMS)
- TransformationModelInterpolated::Interpolator (OpenMS)
- Interpretation (OpenMS::TargetedExperimentHelper)
- InvalidFileType (OpenMS::Exception)
- InvalidIterator (OpenMS::Exception)
- InvalidParameter (OpenMS::Exception)
- InvalidRange (OpenMS::Exception)
- InvalidSize (OpenMS::Exception)
- InvalidValue (OpenMS::Exception)
- IOException (OpenMS::Exception)
- TOPPASToolVertex::IOInfo (OpenMS)
- IonDetector (OpenMS)
- IonDetectorVisualizer (OpenMS)
- IonIdentityMolecularNetworking (OpenMS)
- IonMobilityScoring (OpenMS)
- IonSource (OpenMS)
- IonSourceVisualizer (OpenMS)
- IPeptideIds (OpenMS)
- IsEmptySpectrum (OpenMS)
- IDScoreGetterSetter::IsHitType (OpenMS)
- IDScoreGetterSetter::IsIDType (OpenMS)
- ISignalToNoise (OpenSwath)
- IsInCollisionEnergyRange (OpenMS)
- IsInIsolationWindow (OpenMS)
- IsInIsolationWindowSizeRange (OpenMS)
- IsobaricChannelExtractor (OpenMS)
- IsobaricQuantitationMethod::IsobaricChannelInformation (OpenMS)
- IsobaricIsotopeCorrector (OpenMS)
- IsobaricNormalizer (OpenMS)
- IsobaricQuantifier (OpenMS)
- IsobaricQuantifierStatistics (OpenMS)
- IsobaricQuantitationMethod (OpenMS)
- IsoSpecGeneratorWrapper (OpenMS)
- IsoSpecOrderedGeneratorWrapper (OpenMS)
- IsoSpecThresholdGeneratorWrapper (OpenMS)
- IsoSpecThresholdWrapper (OpenMS)
- IsoSpecTotalProbGeneratorWrapper (OpenMS)
- IsoSpecTotalProbWrapper (OpenMS)
- IsoSpecWrapper (OpenMS)
- IsotopeCluster (OpenMS)
- IsotopeDistribution (OpenMS)
- IsotopeFitter1D (OpenMS)
- IsotopeLabelingMDVs (OpenMS)
- IsotopeModel (OpenMS)
- FeatureFinderAlgorithmPickedHelperStructs::IsotopePattern (OpenMS)
- IsotopePatternGenerator (OpenMS)
- ISpectraReader (OpenMS::Interfaces)
- ISpectraWriter (OpenMS::Interfaces)
- ISpectrumAccess (OpenSwath)
- IsZoomSpectrum (OpenMS)
- Iterator
- AASequence::Iterator (OpenMS)
- HashGrid::Iterator (OpenMS)
- NASequence::Iterator (OpenMS)
- IteratorWrapper (OpenMS::IdentificationDataInternal)
- ITransitionGroup (OpenSwath)
- ItraqConstants (OpenMS)
- ItraqEightPlexQuantitationMethod (OpenMS)
- ItraqFourPlexQuantitationMethod (OpenMS)
- J
- JavaInfo (OpenMS)
- K
- KDTree (KDTree)
- KDTreeFeatureMaps (OpenMS)
- KDTreeFeatureNode (OpenMS)
- KroenikFile (OpenMS)
- L
- MultiplexDeltaMassesGenerator::Label (OpenMS)
- LabeledPairFinder (OpenMS)
- IDBoostGraph::LabelVisitor (OpenMS::Internal)
- LayerAnnotatorAMS (OpenMS)
- LayerAnnotatorBase (OpenMS)
- LayerAnnotatorOSW (OpenMS)
- LayerAnnotatorPeptideID (OpenMS)
- LayerData1DBase (OpenMS)
- LayerData1DChrom (OpenMS)
- LayerData1DIonMobility (OpenMS)
- LayerData1DPeak (OpenMS)
- LayerDataBase (OpenMS)
- LayerDataChrom (OpenMS)
- LayerDataConsensus (OpenMS)
- LayerDataDefs (OpenMS)
- LayerDataFeature (OpenMS)
- LayerDataIdent (OpenMS)
- LayerDataIonMobility (OpenMS)
- LayerDataPeak (OpenMS)
- LayerListView (OpenMS)
- LayerStack (OpenMS)
- LayerStatistics (OpenMS)
- LayerStatisticsConsensusMap (OpenMS)
- LayerStatisticsDialog (OpenMS)
- LayerStatisticsFeatureMap (OpenMS)
- LayerStatisticsIdent (OpenMS)
- LayerStatisticsPeakMap (OpenMS)
- LayerStoreData (OpenMS)
- LayerStoreDataConsensusMapAll (OpenMS)
- LayerStoreDataConsensusMapVisible (OpenMS)
- LayerStoreDataFeatureMapAll (OpenMS)
- LayerStoreDataFeatureMapVisible (OpenMS)
- LayerStoreDataIdentAll (OpenMS)
- LayerStoreDataIdentVisible (OpenMS)
- LayerStoreDataPeakMapAll (OpenMS)
- LayerStoreDataPeakMapVisible (OpenMS)
- LevMarqFitter1D (OpenMS)
- LightCompound (OpenSwath)
- LightModification (OpenSwath)
- LightProtein (OpenSwath)
- LightTargetedExperiment (OpenSwath)
- LightTransition (OpenSwath)
- LinearInterpolation (OpenMS::Math)
- LinearRegression (OpenMS::Math)
- LinearRegressionWithoutIntercept (OpenMS::Math)
- LinearResampler (OpenMS)
- LinearResamplerAlign (OpenMS)
- ListEditor (OpenMS)
- ListEditorDelegate (OpenMS::Internal)
- ListFilterDialog (OpenMS)
- ListTable (OpenMS::Internal)
- ListUtils (OpenMS)
- InternalCalibration::LockMass (OpenMS)
- LogStreamBuf::LogCacheStruct (OpenMS::Logger)
- LogConfigHandler (OpenMS)
- FLASHDeconvHelperStructs::LogMzPeak (OpenMS)
- LogStream (OpenMS::Logger)
- LogStreamBuf (OpenMS::Logger)
- LogStreamNotifier (OpenMS::Logger)
- LogWindow (OpenMS)
- Looper (OpenMS::Internal)
- Looper< grid_size, grid_size, EvalResult, Tuple, TupleTypes... > (OpenMS::Internal)
- Looper< param_index, grid_size, EvalResult, Tuple, FirstTupleType, TupleTypes... > (OpenMS::Internal)
- SimpleTSGXLMS::LossIndex (OpenMS)
- TheoreticalSpectrumGeneratorXLMS::LossIndex (OpenMS)
- LowessSmoothing (OpenMS)
- LPWrapper (OpenMS)
- PercolatorFeatureSetHelper::lq_PeptideEvidence (OpenMS)
- PercolatorFeatureSetHelper::lq_ProteinHit (OpenMS)
- M
- MapAlignmentAlgorithmIdentification (OpenMS)
- MapAlignmentAlgorithmKD (OpenMS)
- MapAlignmentAlgorithmPoseClustering (OpenMS)
- MapAlignmentAlgorithmTreeGuided (OpenMS)
- MapAlignmentEvaluationAlgorithm (OpenMS)
- MapAlignmentEvaluationAlgorithmPrecision (OpenMS)
- MapAlignmentEvaluationAlgorithmRecall (OpenMS)
- MapAlignmentTransformer (OpenMS)
- MapConversion (OpenMS)
- ProteinIdentification::Mapping (OpenMS)
- AccurateMassSearchEngine::MappingEntry_ (OpenMS)
- MappingParam (OpenMS::Internal)
- ConsensusFeature::MapsLess (OpenMS)
- ModifiedPeptideGenerator::MapToResidueType (OpenMS)
- MapUtilities (OpenMS)
- MascotGenericFile (OpenMS)
- MascotInfile (OpenMS)
- MascotRemoteQuery (OpenMS)
- MascotXMLFile (OpenMS)
- MascotXMLHandler (OpenMS::Internal)
- MassAnalyzer (OpenMS)
- MassAnalyzerVisualizer (OpenMS)
- MassDecomposer (OpenMS::ims)
- MassDecomposition (OpenMS)
- MassDecompositionAlgorithm (OpenMS)
- MassExplainer (OpenMS)
- FLASHDeconvHelperStructs::MassFeature (OpenMS)
- MassFeatureTrace (OpenMS)
- IMSAlphabet::MassSortingCriteria_ (OpenMS::ims)
- FeatureFinderAlgorithmPickedHelperStructs::MassTrace (OpenMS)
- MassTrace (OpenMS)
- FeatureFinderAlgorithmMetaboIdent::MassTraceBounds (OpenMS)
- MasstraceCorrelator (OpenMS)
- MassTraceDetection (OpenMS)
- FeatureFinderAlgorithmPickedHelperStructs::MassTraces (OpenMS)
- TargetedSpectraExtractor::Match (OpenMS)
- MatchedIterator (OpenMS)
- Matrix (Eigen)
- Matrix (OpenMS)
- MaxLikeliFitter1D (OpenMS)
- mean_and_stddev (OpenSwath)
- SysInfo::MemUsage (OpenMS)
- MessagePasserFactory (OpenMS::Internal)
- MetaboliteFeatureDeconvolution (OpenMS)
- MetaboliteSpectralMatching (OpenMS)
- MetaboTargetedTargetDecoy::MetaboTargetDecoyMassMapping (OpenMS)
- MetaboTargetedAssay (OpenMS)
- MetaboTargetedTargetDecoy (OpenMS)
- MetaDataBrowser (OpenMS)
- MetaInfo (OpenMS)
- MetaInfoDescription (OpenMS)
- MetaInfoDescriptionVisualizer (OpenMS)
- MetaInfoInterface (OpenMS)
- MetaInfoInterfaceUtils (OpenMS)
- MetaInfoRegistry (OpenMS)
- MetaInfoVisualizer (OpenMS)
- MetaKeyGetter (OpenMS::Detail)
- MinimumDistance (OpenMS)
- MissedCleavages (OpenMS)
- MissingInformation (OpenMS::Exception)
- MobilityPeak1D::MobilityLess (OpenMS)
- IonMobilityScoring::MobilityPeak (OpenMS)
- MobilityPeak1D (OpenMS)
- MobilityPeak2D (OpenMS)
- Mobilogram (OpenMS)
- MockFeature (OpenSwath)
- MockMRMFeature (OpenSwath)
- MockSignalToNoise (OpenSwath)
- MockTransitionGroup (OpenSwath)
- TraceFitter::ModelData (OpenMS)
- ModelDescription (OpenMS)
- Modification (OpenMS)
- Peptide::Modification (OpenMS::TargetedExperimentHelper)
- ModificationDefinition (OpenMS)
- ModificationDefinitionsSet (OpenMS)
- MzIdentMLDOMHandler::ModificationParam (OpenMS::Internal)
- ModificationsDB (OpenMS)
- ModificationVisualizer (OpenMS)
- ModifiedNASequenceGenerator (OpenMS)
- ModifiedPeptideGenerator (OpenMS)
- IdentificationData::ModifyMultiIndexAddProcessingStep (OpenMS)
- IdentificationData::ModifyMultiIndexAddScore (OpenMS)
- IdentificationData::ModifyMultiIndexRemoveParentMatches (OpenMS)
- MorpheusScore (OpenMS)
- MorphologicalFilter (OpenMS)
- MQExporterHelper::MQCommonOutputs
- MQEvidence
- MQExporterHelper
- MQMsms
- MRMAssay (OpenMS)
- MRMBatchFeatureSelector (OpenMS)
- MRMDecoy (OpenMS)
- MRMFeature (OpenMS)
- MRMFeatureFilter (OpenMS)
- MRMFeatureFinderScoring (OpenMS)
- MRMFeatureOpenMS (OpenMS)
- MRMFeaturePicker (OpenMS)
- MRMFeaturePickerFile (OpenMS)
- MRMFeatureQC (OpenMS)
- MRMFeatureQCFile (OpenMS)
- MRMFeatureSelector (OpenMS)
- MRMFeatureSelector_test (OpenMS)
- MRMFeatureSelectorQMIP (OpenMS)
- MRMFeatureSelectorScore (OpenMS)
- MRMIonSeries (OpenMS)
- MRMMapping (OpenMS)
- MRMRTNormalizer (OpenMS)
- MRMScoring (OpenSwath)
- MRMTransitionGroup (OpenMS)
- MRMTransitionGroupPicker (OpenMS)
- MS2File (OpenMS)
- Ms2IdentificationRate (OpenMS)
- Ms2SpectrumStats (OpenMS)
- MSChromatogram (OpenMS)
- MSDataAggregatingConsumer (OpenMS)
- MSDataCachedConsumer (OpenMS)
- MSDataChainingConsumer (OpenMS)
- MSDataSqlConsumer (OpenMS)
- MSDataStoringConsumer (OpenMS)
- MSDataTransformingConsumer (OpenMS)
- MSDataWritingConsumer (OpenMS)
- MSExperiment (OpenMS)
- ExperimentalDesign::MSFileSectionEntry (OpenMS)
- MsInspectFile (OpenMS)
- MSNumpressCoder (OpenMS)
- MSPFile (OpenMS)
- MSPGenericFile (OpenMS)
- MSPGenericFile_friend (OpenMS)
- MSSpectrum (OpenMS)
- MSstatsFile (OpenMS)
- MSstatsFile::MSstatsLine_ (OpenMS)
- MSstatsFile::MSstatsTMTLine_ (OpenMS)
- MultiGradient (OpenMS)
- MultiGradientSelector (OpenMS)
- MultiplexClustering (OpenMS)
- MultiplexDeltaMasses (OpenMS)
- MultiplexDeltaMassesGenerator (OpenMS)
- MultiplexClustering::MultiplexDistance (OpenMS)
- MultiplexFilteredMSExperiment (OpenMS)
- MultiplexFilteredPeak (OpenMS)
- MultiplexFiltering (OpenMS)
- MultiplexFilteringCentroided (OpenMS)
- MultiplexFilteringProfile (OpenMS)
- MultiplexIsotopicPeakPattern (OpenMS)
- MultiplexSatelliteCentroided (OpenMS)
- MultiplexSatelliteProfile (OpenMS)
- MzCalibration (OpenMS)
- MzDataFile (OpenMS)
- MzDataHandler (OpenMS::Internal)
- MzDataValidator (OpenMS::Internal)
- MzIdentMLDOMHandler (OpenMS::Internal)
- MzIdentMLFile (OpenMS)
- MzIdentMLHandler (OpenMS::Internal)
- MzIdentMLValidator (OpenMS::Internal)
- MobilityPeak2D::MZLess (OpenMS)
- MSChromatogram::MZLess (OpenMS)
- Peak1D::MZLess (OpenMS)
- Peak2D::MZLess (OpenMS)
- MzMLFile (OpenMS)
- MzMLHandler (OpenMS::Internal)
- MzMLHandlerHelper (OpenMS::Internal)
- MzMLSpectrumDecoder (OpenMS)
- MzMLSqliteHandler (OpenMS::Internal)
- MzMLSqliteSwathHandler (OpenMS::Internal)
- MzMLSwathFileConsumer (OpenMS)
- MzMLValidator (OpenMS::Internal)
- MzQCFile (OpenMS)
- MzTab (OpenMS)
- MzTabAssayMetaData (OpenMS)
- MzTabBase (OpenMS)
- MzTabBoolean (OpenMS)
- MzTabContactMetaData (OpenMS)
- MzTabCVMetaData (OpenMS)
- MzTabDouble (OpenMS)
- MzTabDoubleList (OpenMS)
- MzTabFile (OpenMS)
- MzTabInstrumentMetaData (OpenMS)
- MzTabInteger (OpenMS)
- MzTabIntegerList (OpenMS)
- MzTabM (OpenMS)
- MzTabMAssayMetaData (OpenMS)
- MzTabMDatabaseMetaData (OpenMS)
- MzTabMetaData (OpenMS)
- MzTabMFile (OpenMS)
- MzTabMMetaData (OpenMS)
- MzTabMMSRunMetaData (OpenMS)
- MzTabModification (OpenMS)
- MzTabModificationList (OpenMS)
- MzTabModificationMetaData (OpenMS)
- MzTabMSmallMoleculeEvidenceSectionRow (OpenMS)
- MzTabMSmallMoleculeFeatureSectionRow (OpenMS)
- MzTabMSmallMoleculeSectionRow (OpenMS)
- MzTabMSRunMetaData (OpenMS)
- MzTabMStudyVariableMetaData (OpenMS)
- MzTabNucleicAcidSectionRow (OpenMS)
- MzTabOligonucleotideSectionRow (OpenMS)
- MzTabOSMSectionRow (OpenMS)
- MzTabParameter (OpenMS)
- MzTabParameterList (OpenMS)
- MzTabPeptideSectionRow (OpenMS)
- MzTabProteinSectionRow (OpenMS)
- MzTabPSMSectionRow (OpenMS)
- MzTabSampleMetaData (OpenMS)
- MzTabSmallMoleculeSectionRow (OpenMS)
- MzTabSoftwareMetaData (OpenMS)
- MzTabSpectraRef (OpenMS)
- MzTabString (OpenMS)
- MzTabStringList (OpenMS)
- MzTabStudyVariableMetaData (OpenMS)
- MZTrafoModel (OpenMS)
- MzXMLFile (OpenMS)
- MzXMLHandler (OpenMS::Internal)
- N
- ReactionMonitoringTransition::NameLess (OpenMS)
- NASequence (OpenMS)
- SplineInterpolatedPeaks::Navigator (OpenMS)
- NeedlemanWunsch (OpenMS)
- QTCluster::Neighbor (OpenMS)
- NeighborSeq (OpenMS)
- NeighborSeq::NeighborStats (OpenMS)
- NetworkGetRequest (OpenMS)
- NLargest (OpenMS)
- SignalToNoiseEstimatorMedianRapid::NoiseEstimator (OpenMS)
- _Alloc_base::NoLeakAlloc (KDTree)
- NonNegativeLeastSquaresSolver (OpenMS)
- NoopMSDataConsumer (OpenMS)
- NoopMSDataWritingConsumer (OpenMS)
- Normalizer (OpenMS)
- FeatureFinderDefs::NoSuccessor (OpenMS)
- NotImplemented (OpenMS::Exception)
- NotSorted (OpenMS::Exception)
- NucleicAcidSearchEngine
- NucleicAcidSpectrumGenerator (OpenMS)
- NullPointer (OpenMS::Exception)
- MSNumpressCoder::NumpressConfig (OpenMS)
- O
- Observation (OpenMS::IdentificationDataInternal)
- ObservationMatch (OpenMS::IdentificationDataInternal)
- ObservationMatchGroup (OpenMS::IdentificationDataInternal)
- OMSFile (OpenMS)
- OMSFileLoad (OpenMS::Internal)
- OMSFileStore (OpenMS::Internal)
- OMSSACSVFile (OpenMS)
- OMSSAXMLFile (OpenMS)
- OnDiscMSExperiment (OpenMS)
- OpenMSBuildInfo (OpenMS::Internal)
- OpenMSLineEdit (OpenMS::Internal)
- OpenMSOSInfo (OpenMS::Internal)
- OpenPepXLAlgorithm (OpenMS)
- OpenPepXLLFAlgorithm (OpenMS)
- OpenSwath_Ind_Scores (OpenMS)
- OpenSwath_Scores (OpenMS)
- OpenSwath_Scores_Usage (OpenMS)
- OpenSwathCalibrationWorkflow (OpenMS)
- OpenSwathDataAccessHelper (OpenMS)
- OpenSwathHelper (OpenMS)
- OpenSwathOSWWriter (OpenMS)
- OpenSwathScoring (OpenMS)
- OpenSwathTSVWriter (OpenMS)
- OpenSwathWorkflow (OpenMS)
- OpenSwathWorkflowBase (OpenMS)
- OpenSwathWorkflowSonar (OpenMS)
- OPXLDataStructs (OpenMS)
- OPXLHelper (OpenMS)
- OPXLSpectrumProcessingAlgorithms (OpenMS)
- OSBinaryDataArray (OpenSwath)
- OSChromatogram (OpenSwath)
- OSChromatogramMeta (OpenSwath)
- OSSpectrum (OpenSwath)
- OSSpectrumMeta (OpenSwath)
- OSWData (OpenMS)
- OSWFile (OpenMS)
- OSWHierarchy (OpenMS)
- OSWIndexTrace (OpenMS)
- OSWPeakGroup (OpenMS)
- OSWPeptidePrecursor (OpenMS)
- OSWProtein (OpenMS)
- OSWTransition (OpenMS)
- OutOfGrid (OpenMS::Exception)
- OutOfMemory (OpenMS::Exception)
- OutOfRange (OpenMS::Exception)
- OutputDirectory (OpenMS)
- OverlapDetector (OpenMS::GUIHelpers)
- P
- Painter1DBase (OpenMS)
- Painter1DChrom (OpenMS)
- Painter1DIonMobility (OpenMS)
- Painter1DPeak (OpenMS)
- Painter2DBase (OpenMS)
- Painter2DChrom (OpenMS)
- Painter2DConsensus (OpenMS)
- Painter2DFeature (OpenMS)
- Painter2DIdent (OpenMS)
- Painter2DIonMobility (OpenMS)
- Painter2DPeak (OpenMS)
- PainterBase (OpenMS)
- pair_hash (OpenSwath::Scoring)
- Param (OpenMS)
- AreaIterator::Param (OpenMS::Internal)
- ParamCTDFile (OpenMS)
- ParamCWLFile (OpenMS)
- ParamEditor (OpenMS)
- ParamEditorDelegate (OpenMS::Internal)
- Param::ParamEntry (OpenMS)
- ParameterInformation (OpenMS)
- Param::ParamIterator (OpenMS)
- ParamJSONFile (OpenMS)
- Param::ParamNode (OpenMS)
- ParamTree (OpenMS::Internal)
- ParamValue (OpenMS)
- ParamXMLFile (OpenMS)
- ParamXMLHandler (OpenMS::Internal)
- ParentGroup (OpenMS::IdentificationDataInternal)
- ParentGroupSet (OpenMS::IdentificationDataInternal)
- ParentMatch (OpenMS::IdentificationDataInternal)
- ParentSequence (OpenMS::IdentificationDataInternal)
- ParseError (OpenMS::Exception)
- ParseError
- IMSIsotopeDistribution::Peak (OpenMS::ims)
- Peak1D (OpenMS)
- Peak2D (OpenMS)
- PeakAlignment (OpenMS)
- PeptideHit::PeakAnnotation (OpenMS)
- PeakIntegrator::PeakArea (OpenMS)
- PeakIntegrator::PeakBackground (OpenMS)
- PeakPickerHiRes::PeakBoundary (OpenMS)
- PeakCandidate (OpenMS)
- PeakFileOptions (OpenMS)
- PeakGroup (OpenMS)
- PeakIndex (OpenMS)
- PeakIntegrator (OpenMS)
- PeakPickerChromatogram (OpenMS)
- PeakPickerHiRes (OpenMS)
- PeakPickerIterative (OpenMS)
- PeakIntegrator::PeakShapeMetrics (OpenMS)
- PeakSpectrumCompareFunctor (OpenMS)
- PeakTypeEstimator (OpenMS)
- PeakWidthEstimator (OpenMS)
- IdentificationDataConverter::PepIDCompare (OpenMS)
- PepNovoInfile (OpenMS)
- PepNovoOutfile (OpenMS)
- Peptide (OpenMS::TargetedExperimentHelper)
- Peptide (OpenSwath)
- PeptideAndProteinQuant (OpenMS)
- FeatureFinderIdentificationAlgorithm::PeptideCompare (OpenMS)
- PeptideCompound (OpenMS::TargetedExperimentHelper)
- PeptideAndProteinQuant::PeptideData (OpenMS)
- IDFilter::PeptideDigestionFilter (OpenMS)
- MzIdentMLDOMHandler::PeptideEvidence (OpenMS::Internal)
- PeptideEvidence (OpenMS)
- PeptideHit (OpenMS)
- PeptideHitVisualizer (OpenMS)
- PeptideIdentification (OpenMS)
- PeptideIdentificationVisualizer (OpenMS)
- OPXLHelper::PeptideIDScoreComparator (OpenMS)
- PeptideIndexing (OpenMS)
- PeptideMass (OpenMS)
- PeptideProteinResolution (OpenMS)
- PeptideHit::PepXMLAnalysisResult (OpenMS)
- PepXMLFile (OpenMS)
- PepXMLFileMascot (OpenMS)
- OSWFile::PercolatorFeature (OpenMS)
- PercolatorFeatureSetHelper (OpenMS)
- PercolatorInfile (OpenMS)
- PercolatorOutfile (OpenMS)
- PlainMSDataWritingConsumer (OpenMS)
- Plot1DCanvas (OpenMS)
- Plot1DGoToDialog (OpenMS)
- Plot1DPrefDialog (OpenMS::Internal)
- Plot1DWidget (OpenMS)
- Plot2DCanvas (OpenMS)
- Plot2DGoToDialog (OpenMS)
- Plot2DPrefDialog (OpenMS::Internal)
- Plot2DWidget (OpenMS)
- Plot3DCanvas (OpenMS)
- Plot3DOpenGLCanvas (OpenMS)
- Plot3DPrefDialog (OpenMS::Internal)
- Plot3DWidget (OpenMS)
- PlotCanvas (OpenMS)
- PlotWidget (OpenMS)
- PoseClusteringAffineSuperimposer (OpenMS)
- PoseClusteringShiftSuperimposer (OpenMS)
- Peak2D::PositionLess (OpenMS)
- MobilityPeak1D::PositionLess (OpenMS)
- Peak1D::PositionLess (OpenMS)
- ChromatogramPeak::PositionLess (OpenMS)
- MobilityPeak2D::PositionLess (OpenMS)
- Postcondition (OpenMS::Exception)
- PosteriorErrorProbabilityModel (OpenMS::Math)
- PpmTrait (OpenMS)
- FLASHDeconvHelperStructs::PrecalculatedAveragine (OpenMS)
- PrecisionWrapper (OpenMS)
- Precondition (OpenMS::Exception)
- Precursor (OpenMS)
- PrecursorCorrection (OpenMS)
- NucleicAcidSearchEngine::PrecursorInfo
- PrecursorMassComparator (OpenMS)
- PrecursorPurity (OpenMS)
- PrecursorVisualizer (OpenMS)
- SimpleSVM::Prediction (OpenMS)
- Prediction (OpenMS::TargetedExperimentHelper)
- FuzzyStringComparator::PrefixInfo_ (OpenMS)
- OPXLDataStructs::PreprocessedPairSpectra (OpenMS)
- IDBoostGraph::PrintAddressVisitor (OpenMS::Internal)
- ProbablePhosphoSites (OpenMS)
- ProcessingSoftware (OpenMS::IdentificationDataInternal)
- ProcessingStep (OpenMS::IdentificationDataInternal)
- Product (OpenMS)
- ReactionMonitoringTransition::ProductMZLess (OpenMS)
- ProductVisualizer (OpenMS)
- ProgressLogger (OpenMS)
- ProgressLogger::ProgressLoggerImpl (OpenMS)
- LayerDataDefs::ProjectionData (OpenMS)
- ProteaseDB (OpenMS)
- ProteaseDigestion (OpenMS)
- Protein (OpenMS::TargetedExperimentHelper)
- Protein (OpenSwath)
- PeptideAndProteinQuant::ProteinData (OpenMS)
- IDBoostGraph::ProteinGroup (OpenMS::Internal)
- ProteinIdentification::ProteinGroup (OpenMS)
- ProteinHit (OpenMS)
- ProteinHit::ProteinHitAccessionHash (OpenMS)
- ProteinHit::ProteinHitPtrAccessionHash (OpenMS)
- ProteinHitVisualizer (OpenMS)
- ProteinIdentification (OpenMS)
- ProteinIdentificationVisualizer (OpenMS)
- ProteinInference (OpenMS)
- OPXLDataStructs::ProteinProteinCrossLink (OpenMS)
- ProtXMLFile (OpenMS)
- PScore (OpenMS)
- HyperScore::PSMDetail (OpenMS)
- PSMExplainedIonCurrent (OpenMS)
- PTMXMLFile (OpenMS)
- PTMXMLHandler (OpenMS::Internal)
- Publication (OpenMS::TargetedExperimentHelper)
- IsobaricChannelExtractor::PuritySate_ (OpenMS)
- PrecursorPurity::PurityScores (OpenMS)
- PythonInfo (OpenMS)
- PythonModuleRequirement (OpenMS::Internal)
- PythonSelector (OpenMS::Internal)
- Q
- QApplication
- QApplicationTOPP (OpenMS)
- QCBase (OpenMS)
- QcMLFile (OpenMS)
- QDate
- QDialog
- QFileSystemWatcher
- QGraphicsItem
- QGraphicsScene
- QGraphicsView
- QItemDelegate
- QLineEdit
- QListWidget
- QMainWindow
- QMdiArea
- QObject
- QOpenGLFunctions_2_0
- QOpenGLWidget
- QProcess
- Qscore (OpenMS)
- QTabBar
- QTableWidget
- QTabWidget
- QTCluster (OpenMS)
- QTClusterFinder (OpenMS)
- QTextEdit
- QTreeWidget
- QuadraticRegression (OpenMS::Math)
- BaseFeature::QualityLess (OpenMS)
- QcMLFile::QualityParameter (OpenMS)
- Qvalue (OpenMS)
- QWidget
- R
- RAIICleanup (OpenMS)
- RandomShuffler (OpenMS::Math)
- Range (OpenMS)
- RangeBase (OpenMS)
- RangeIntensity (OpenMS)
- RangeManager (OpenMS)
- RangeManagerContainer (OpenMS)
- RangeMobility (OpenMS)
- RangeMZ (OpenMS)
- RangeRT (OpenMS)
- RangeStats (OpenMS)
- RangeStatsType (OpenMS)
- PeptideHit::RankLess (OpenMS)
- RankScaler (OpenMS)
- RANSAC (OpenMS::Math)
- RansacModel (OpenMS::Math)
- RansacModelLinear (OpenMS::Math)
- RansacModelQuadratic (OpenMS::Math)
- RANSACParam (OpenMS::Math)
- ConsensusFeature::Ratio (OpenMS)
- ReactionMonitoringTransition (OpenMS)
- real_policies (boost::spirit::qi)
- StringUtilsHelper::real_policies_NANfixed_ (OpenMS)
- RealMassDecomposer (OpenMS::ims)
- RecentFilesMenu (OpenMS)
- IdentificationData::RefTranslator (OpenMS)
- RefVariant
- RegularSwathFileConsumer (OpenMS)
- Base64::Reinterpreter32_ (OpenMS)
- Base64::Reinterpreter64_ (OpenMS)
- RequiredParameterNotGiven (OpenMS::Exception)
- Residue (OpenMS)
- ResidueDB (OpenMS)
- ResidueModification (OpenMS)
- DecoyHelper::Result (OpenMS)
- TIC::Result (OpenMS)
- MorpheusScore::Result (OpenMS)
- FeatureSummary::Result (OpenMS)
- FalseDiscoveryRate::DecoyStringHelper::Result (OpenMS)
- IdentificationSummary::Result (OpenMS)
- RetentionTime (OpenMS::TargetedExperimentHelper)
- Ribonucleotide (OpenMS)
- RibonucleotideDB (OpenMS)
- RichPeak2D (OpenMS)
- IDRipper::RipFileContent (OpenMS)
- IDRipper::RipFileIdentifier (OpenMS)
- IDRipper::RipFileIdentifierIdxComparator (OpenMS)
- RNaseDB (OpenMS)
- RNaseDigestion (OpenMS)
- RNPxlFragmentAnnotationHelper (OpenMS::Internal)
- RNPxlMarkerIonExtractor (OpenMS)
- ROCCurve (OpenMS::Math)
- MzTabPSMSectionRow::RowCompare (OpenMS)
- MzTabOligonucleotideSectionRow::RowCompare (OpenMS)
- MzTabProteinSectionRow::RowCompare (OpenMS)
- MzTabPeptideSectionRow::RowCompare (OpenMS)
- MzTabOSMSectionRow::RowCompare (OpenMS)
- MzTabNucleicAcidSectionRow::RowCompare (OpenMS)
- RTAlignment (OpenMS)
- ChromatogramPeak::RTLess (OpenMS)
- Mobilogram::RTLess (OpenMS)
- MSSpectrum::RTLess (OpenMS)
- MZTrafoModel::RTLess (OpenMS)
- Peak2D::RTLess (OpenMS)
- OSSpectrumMeta::RTLess (OpenSwath)
- ConfidenceScoring::RTNorm_ (OpenMS)
- FeatureFinderIdentificationAlgorithm::RTRegion (OpenMS)
- AbsoluteQuantitationStandards::runConcentration (OpenMS)
- RWrapper (OpenMS)
- S
- Sample (OpenMS)
- ExperimentalDesign::SampleSection (OpenMS)
- SampleTreatment (OpenMS)
- SampleVisualizer (OpenMS)
- SaveImageDialog (OpenMS)
- SavitzkyGolayFilter (OpenMS)
- Ms2SpectrumStats::ScanEvent (OpenMS)
- ScanWindow (OpenMS)
- ScanWindowVisualizer (OpenMS)
- ScoredProcessingResult (OpenMS::IdentificationDataInternal)
- PeptideHit::ScoreLess (OpenMS)
- ProteinHit::ScoreLess (OpenMS)
- PeptideHit::ScoreMore (OpenMS)
- ProteinHit::ScoreMore (OpenMS)
- ScoreToTgtDecLabelPairs (OpenMS)
- ScoreType (OpenMS::IdentificationDataInternal)
- SearchEngineBase (OpenMS)
- ProteinIdentification::SearchParameters (OpenMS)
- FeatureFinderAlgorithmPickedHelperStructs::Seed (OpenMS)
- SeedListGenerator (OpenMS)
- MRMFeatureSelector::SelectorParameters (OpenMS)
- SpectraIDViewTab::SelfResizingTableView_ (OpenMS)
- SemanticValidator (OpenMS::Internal)
- PeptideHit::SequenceLessComparator (OpenMS)
- SequestInfile (OpenMS)
- SequestOutfile (OpenMS)
- IDBoostGraph::SetPosteriorVisitor (OpenMS::Internal)
- shared_xerces_ptr (OpenMS::Internal)
- SignalProvider (OpenMS)
- SignalToNoiseEstimator (OpenMS)
- SignalToNoiseEstimatorMeanIterative (OpenMS)
- SignalToNoiseEstimatorMedian (OpenMS)
- SignalToNoiseEstimatorMedianRapid (OpenMS)
- SignalToNoiseOpenMS (OpenMS)
- SimpleOpenMSSpectraFactory (OpenMS)
- SimpleTSGXLMS::SimplePeak (OpenMS)
- SimpleTSGXLMS::SimplePeakComparator (OpenMS)
- SimpleSearchEngineAlgorithm (OpenMS)
- SimpleSVM (OpenMS)
- SimpleTSGXLMS (OpenMS)
- ROCCurve::simsortdec (OpenMS::Math)
- SingleLinkage (OpenMS)
- SiriusExportAlgorithm (OpenMS)
- SiriusFragmentAnnotation (OpenMS)
- SiriusMSFile (OpenMS)
- SiriusFragmentAnnotation::SiriusTargetDecoySpectra (OpenMS)
- ConsensusFeature::SizeLess (OpenMS)
- SizeUnderflow (OpenMS::Exception)
- Software (OpenMS)
- SoftwareVisualizer (OpenMS)
- LPWrapper::SolverParam (OpenMS)
- SONARScoring (OpenMS)
- SourceFile (OpenMS)
- SourceFileVisualizer (OpenMS)
- SparseVector (Eigen)
- SpecArrayFile (OpenMS)
- MzMLFile::SpecInfo (OpenMS)
- SpectraMerger::SpectraDistance_ (OpenMS)
- IDMapper::SpectraIdentificationState (OpenMS)
- SpectraIDViewTab (OpenMS)
- SpectralMatch (OpenMS)
- SpectralMatchScoreComparator (OpenMS)
- QCBase::SpectraMap (OpenMS)
- SpectraMerger (OpenMS)
- SpectraSTSimilarityScore (OpenMS)
- SpectraTreeTab (OpenMS)
- Spectrum (OpenMS::Interfaces)
- SpectrumAccessOpenMS (OpenMS)
- SpectrumAccessOpenMSCached (OpenMS)
- SpectrumAccessOpenMSInMemory (OpenMS)
- SpectrumAccessQuadMZTransforming (OpenMS)
- SpectrumAccessSqMass (OpenMS)
- SpectrumAccessTransforming (OpenMS)
- SpectrumAddition (OpenMS)
- SpectrumAlignment (OpenMS)
- SpectrumAlignmentDialog (OpenMS)
- SpectrumAlignmentScore (OpenMS)
- SpectrumAnnotator (OpenMS)
- SpectrumCheapDPCorr (OpenMS)
- SpectrumCount (OpenMS)
- MzMLHandler::SpectrumData (OpenMS::Internal)
- MzXMLHandler::SpectrumData (OpenMS::Internal)
- MzIdentMLDOMHandler::SpectrumIdentification (OpenMS::Internal)
- SpectrumIdentification (OpenMS::Internal)
- MzIdentMLDOMHandler::SpectrumIdentificationProtocol (OpenMS::Internal)
- SpectrumLookup (OpenMS)
- SpectrumMeta (OpenMS::Interfaces)
- SpectrumMetaDataLookup::SpectrumMetaData (OpenMS)
- SpectrumMetaDataLookup (OpenMS)
- SpectrumPrecursorComparator (OpenMS)
- SpectrumSettings (OpenMS)
- SpectrumSettingsVisualizer (OpenMS)
- SplineInterpolatedPeaks (OpenMS)
- SplinePackage (OpenMS)
- SqliteConnector (OpenMS)
- SqlOperationFailed (OpenMS::Exception)
- SqMassFile::SqMassConfig (OpenMS)
- SqMassFile (OpenMS)
- SqrtScaler (OpenMS)
- squared_difference (KDTree)
- squared_difference_counted (KDTree)
- StablePairFinder (OpenMS)
- FragmentMassError::Statistics (OpenMS)
- PSMExplainedIonCurrent::Statistics (OpenMS)
- PeptideAndProteinQuant::Statistics (OpenMS)
- StatsCounter (OpenMS)
- SteinScottImproveScore (OpenMS)
- IdentificationDataConverter::StepOptCompare (OpenMS)
- StopWatch (OpenMS)
- FuzzyStringComparator::StreamElement_ (OpenMS)
- StreamHandler (OpenMS)
- LogStreamBuf::StreamStruct (OpenMS::Logger)
- String (OpenMS)
- StringDataArray (OpenMS::DataArrays)
- StringListUtils (OpenMS)
- StringManager (OpenMS::Internal)
- StringUtilsHelper (OpenMS)
- StringView (OpenMS)
- DBSuitability::SuitabilityData (OpenMS)
- LayerDataDefs::ProjectionData::Summary (OpenMS)
- Summary (OpenMS)
- SummaryStatistics (OpenMS::Math)
- TargetedExperiment::SummaryStatistics (OpenMS)
- SVOutStream (OpenMS)
- SwathFile (OpenMS)
- SwathLibraryStats (OpenMS)
- SwathMap (OpenSwath)
- SwathMapMassCorrection (OpenMS)
- SwathQC (OpenSwath)
- SwathTabWidget (OpenMS::Internal)
- SwathWindowLoader (OpenMS)
- SwathWizardBase (OpenMS)
- SysInfo (OpenMS)
- T
- TableView (OpenMS)
- Tagger (OpenMS)
- Tagging (OpenMS)
- TaggingVisualizer (OpenMS)
- MetaboTargetedAssay::TargetDecoyGroup (OpenMS)
- TargetedExperiment (OpenMS)
- TargetedExperiment (OpenSwath)
- TargetedSpectraExtractor (OpenMS)
- File::TempDir (OpenMS)
- File::TemporaryFiles_ (OpenMS)
- TextFile (OpenMS)
- FeatureFinderAlgorithmPickedHelperStructs::TheoreticalIsotopePattern (OpenMS)
- TheoreticalSpectrumGenerationDialog (OpenMS)
- TheoreticalSpectrumGenerator (OpenMS)
- TheoreticalSpectrumGeneratorXLMS (OpenMS)
- ThresholdMower (OpenMS)
- TIC (OpenMS)
- StopWatch::TimeDiff_ (OpenMS)
- TMTEighteenPlexQuantitationMethod (OpenMS)
- TMTElevenPlexQuantitationMethod (OpenMS)
- TMTSixPlexQuantitationMethod (OpenMS)
- TMTSixteenPlexQuantitationMethod (OpenMS)
- TMTTenPlexQuantitationMethod (OpenMS)
- ToolDescription (OpenMS::Internal)
- ToolDescriptionFile (OpenMS)
- ToolDescriptionHandler (OpenMS::Internal)
- ToolDescriptionInternal (OpenMS::Internal)
- ToolExternalDetails (OpenMS::Internal)
- ToolHandler (OpenMS)
- ToolInfo (OpenMS)
- ToolsDialog (OpenMS)
- TOPPASBase (OpenMS)
- TOPPASEdge (OpenMS)
- TOPPASVertex::TOPPASFilenames (OpenMS)
- TOPPASInputFileDialog (OpenMS)
- TOPPASInputFileListVertex (OpenMS)
- TOPPASInputFilesDialog (OpenMS)
- TOPPASIOMappingDialog (OpenMS)
- TOPPASMergerVertex (OpenMS)
- TOPPASOutputFileListVertex (OpenMS)
- TOPPASOutputFilesDialog (OpenMS)
- TOPPASResource (OpenMS)
- TOPPASResources (OpenMS)
- TOPPASScene (OpenMS)
- TOPPASSplitterVertex (OpenMS)
- TOPPASToolConfigDialog (OpenMS)
- TOPPASToolVertex (OpenMS)
- TOPPASTreeView (OpenMS)
- TOPPASVertex (OpenMS)
- TOPPASVertexNameDialog (OpenMS)
- TOPPASWidget (OpenMS)
- TOPPBase (OpenMS)
- TOPPFLASHDeconv
- TOPPGNPSExport
- TOPPOpenSwathBase (OpenMS)
- TOPPASScene::TOPPProcess (OpenMS)
- TOPPViewBase (OpenMS)
- TOPPViewMenu (OpenMS)
- TOPPViewOpenDialog (OpenMS)
- TOPPViewPrefDialog (OpenMS::Internal)
- TraceFitter (OpenMS)
- Param::ParamIterator::TraceInfo (OpenMS)
- TraMLFile (OpenMS)
- TraMLHandler (OpenMS::Internal)
- TraMLProduct (OpenMS::TargetedExperimentHelper)
- TraMLValidator (OpenMS::Internal)
- IDDecoyProbability::Transformation_ (OpenMS)
- TransformationDescription (OpenMS)
- TransformationModel (OpenMS)
- TransformationModelBSpline (OpenMS)
- TransformationModelInterpolated (OpenMS)
- TransformationModelLinear (OpenMS)
- TransformationModelLowess (OpenMS)
- TransformationDescription::TransformationStatistics (OpenMS)
- TransformationXMLFile (OpenMS)
- TransitionGroupOpenMS (OpenMS)
- TransitionHelper (OpenSwath)
- TransitionPQPFile (OpenMS)
- TransitionTSVFile (OpenMS)
- TreeView (OpenMS)
- TriqlerFile (OpenMS)
- TriqlerFile::TriqlerLine_ (OpenMS)
- TransitionTSVFile::TSVTransition (OpenMS)
- TVControllerBase (OpenMS)
- TVDIATreeTabController (OpenMS)
- TVIdentificationViewController (OpenMS)
- TVSpectraViewController (OpenMS)
- TVToolDiscovery (OpenMS)
- U
- UnableToCalibrate (OpenMS::Exception)
- UnableToCreateFile (OpenMS::Exception)
- UnableToFit (OpenMS::Exception)
- UnimodXMLFile (OpenMS)
- UnimodXMLHandler (OpenMS::Internal)
- unique_xerces_ptr (OpenMS::Internal)
- IdentificationSummary::UniqueID (OpenMS)
- UniqueIdGenerator (OpenMS)
- UniqueIdIndexer (OpenMS)
- UniqueIdInterface (OpenMS)
- CVTerm::Unit (OpenMS)
- UnnormalizedComparator (OpenMS)
- UnregisteredParameter (OpenMS::Exception)
- UpdateCheck (OpenMS)
- V
- ValueTrait (OpenMS)
- VecLowPrecision (OpenMS)
- VersionInfo::VersionDetails (OpenMS)
- VersionInfo (OpenMS)
- TOPPASVertex::VertexRoundPackage (OpenMS)
- W
- Weights (OpenMS::ims)
- WindowMower (OpenMS)
- WizardGUILock (OpenMS::Internal)
- WrongParameterType (OpenMS::Exception)
- X
- XCorrArrayType (OpenSwath::Scoring)
- XFDRAlgorithm (OpenMS)
- OPXLDataStructs::XLPrecursor (OpenMS)
- OPXLDataStructs::XLPrecursorComparator (OpenMS)
- XMassFile (OpenMS)
- XMLFile (OpenMS::Internal)
- XMLHandler (OpenMS::Internal)
- XMLValidator (OpenMS)
- XQuestResultXMLFile (OpenMS)
- XQuestResultXMLHandler (OpenMS::Internal)
- XQuestScores (OpenMS)
- XTandemInfile (OpenMS)
- XTandemXMLFile (OpenMS)
- Z
- ZhangSimilarityScore (OpenMS)
- ZlibCompression (OpenMS)
- _
- _Alloc_base (KDTree)
- _Base_iterator (KDTree)
- _Bracket_accessor (KDTree)
- _Iterator (KDTree)
- _Node (KDTree)
- _Node_base (KDTree)
- _Node_compare (KDTree)
- _Region (KDTree)