SimpleSearchEngineAlgorithm::AnnotatedHit_ Struct Reference

Slimmer structure as storing all scored candidates in PeptideHit objects takes too much space. More...

#include <OpenMS/ANALYSIS/ID/SimpleSearchEngineAlgorithm.h>

Collaboration diagram for SimpleSearchEngineAlgorithm::AnnotatedHit_:

Static Public Member Functions
static bool	hasBetterScore (const AnnotatedHit_ &a, const AnnotatedHit_ &b)

Public Attributes
StringView	sequence
SignedSize	peptide_mod_index
	enumeration index of the non-RNA peptide modification More...
double	score = 0
	main score More...
std::vector< PeptideHit::PeakAnnotation >	fragment_annotations
double	prefix_fraction = 0
	fraction of annotated b-ions More...
double	suffix_fraction = 0
	fraction of annotated y-ions More...
double	mean_error = 0.0
	mean absolute fragment mass error More...

Detailed Description

Slimmer structure as storing all scored candidates in PeptideHit objects takes too much space.

Member Function Documentation

hasBetterScore()

static bool hasBetterScore ( const AnnotatedHit_ &  a, const AnnotatedHit_ &  b  )

inlinestatic

References SimpleSearchEngineAlgorithm::AnnotatedHit_::peptide_mod_index, SimpleSearchEngineAlgorithm::AnnotatedHit_::score, and SimpleSearchEngineAlgorithm::AnnotatedHit_::sequence.

Member Data Documentation

fragment_annotations

std::vector<PeptideHit::PeakAnnotation> fragment_annotations

mean_error

double mean_error = 0.0

mean absolute fragment mass error

peptide_mod_index

SignedSize peptide_mod_index

enumeration index of the non-RNA peptide modification

Referenced by SimpleSearchEngineAlgorithm::AnnotatedHit_::hasBetterScore().

prefix_fraction

double prefix_fraction = 0

fraction of annotated b-ions

score

double score = 0

main score

Referenced by SimpleSearchEngineAlgorithm::AnnotatedHit_::hasBetterScore().

sequence

StringView sequence

Referenced by SimpleSearchEngineAlgorithm::AnnotatedHit_::hasBetterScore().

suffix_fraction

double suffix_fraction = 0

fraction of annotated y-ions