LightTargetedExperiment Struct Reference

#include <OpenMS/OPENSWATHALGO/DATAACCESS/TransitionExperiment.h>

Collaboration diagram for LightTargetedExperiment:

Public Types
typedef LightTransition	Transition
typedef LightCompound	Peptide
typedef LightCompound	Compound
typedef LightProtein	Protein

Public Member Functions
	LightTargetedExperiment ()
std::vector< LightTransition > &	getTransitions ()
const std::vector< LightTransition > &	getTransitions () const
std::vector< LightCompound > &	getCompounds ()
const std::vector< LightCompound > &	getCompounds () const
std::vector< LightProtein > &	getProteins ()
const std::vector< LightProtein > &	getProteins () const
const LightCompound &	getPeptideByRef (const std::string &ref)
const LightCompound &	getCompoundByRef (const std::string &ref)

Public Attributes
std::vector< LightTransition >	transitions
std::vector< LightCompound >	compounds
std::vector< LightProtein >	proteins

Private Member Functions
void	createPeptideReferenceMap_ ()

Private Attributes
bool	compound_reference_map_dirty_
std::map< std::string, LightCompound * >	compound_reference_map_

Member Typedef Documentation

Compound

typedef LightCompound Compound

Peptide

typedef LightCompound Peptide

Protein

typedef LightProtein Protein

Transition

typedef LightTransition Transition

Constructor & Destructor Documentation

LightTargetedExperiment()

LightTargetedExperiment ( )

inline

Member Function Documentation

createPeptideReferenceMap_()

void createPeptideReferenceMap_ ( )

inlineprivate

References LightTargetedExperiment::compound_reference_map_, LightTargetedExperiment::compound_reference_map_dirty_, and LightTargetedExperiment::getCompounds().

Referenced by LightTargetedExperiment::getCompoundByRef().

getCompoundByRef()

const LightCompound& getCompoundByRef ( const std::string &  ref )

inline

References LightTargetedExperiment::compound_reference_map_, LightTargetedExperiment::compound_reference_map_dirty_, and LightTargetedExperiment::createPeptideReferenceMap_().

Referenced by OpenMS::ChromatogramExtractor::extract_id_< OpenSwath::LightTargetedExperiment >(), and LightTargetedExperiment::getPeptideByRef().

getCompounds() [1/2]

std::vector<LightCompound>& getCompounds ( )

inline

References LightTargetedExperiment::compounds.

Referenced by LightTargetedExperiment::createPeptideReferenceMap_().

getCompounds() [2/2]

const std::vector<LightCompound>& getCompounds ( ) const

inline

References LightTargetedExperiment::compounds.

getPeptideByRef()

const LightCompound& getPeptideByRef ( const std::string &  ref )

inline

References LightTargetedExperiment::getCompoundByRef().

getProteins() [1/2]

std::vector<LightProtein>& getProteins ( )

inline

References LightTargetedExperiment::proteins.

getProteins() [2/2]

const std::vector<LightProtein>& getProteins ( ) const

inline

References LightTargetedExperiment::proteins.

getTransitions() [1/2]

std::vector<LightTransition>& getTransitions ( )

inline

References LightTargetedExperiment::transitions.

Referenced by TOPPOpenSwathBase::performCalibration().

getTransitions() [2/2]

const std::vector<LightTransition>& getTransitions ( ) const

inline

References LightTargetedExperiment::transitions.

Member Data Documentation

compound_reference_map_

std::map<std::string, LightCompound*> compound_reference_map_

private

Referenced by LightTargetedExperiment::createPeptideReferenceMap_(), and LightTargetedExperiment::getCompoundByRef().

compound_reference_map_dirty_

bool compound_reference_map_dirty_

private

Referenced by LightTargetedExperiment::createPeptideReferenceMap_(), and LightTargetedExperiment::getCompoundByRef().

compounds

std::vector<LightCompound> compounds

Referenced by LightTargetedExperiment::getCompounds().

proteins

std::vector<LightProtein> proteins

Referenced by LightTargetedExperiment::getProteins().

transitions

std::vector<LightTransition> transitions

Referenced by LightTargetedExperiment::getTransitions(), and TOPPOpenSwathBase::prepareChromOutput().