TheoreticalSpectrumGenerationDialog Class Reference

Dialog which allows to enter an AA or NA sequence and generates a theoretical spectrum for it. More...

#include <OpenMS/VISUAL/DIALOGS/TheoreticalSpectrumGenerationDialog.h>

Inheritance diagram for TheoreticalSpectrumGenerationDialog:

Collaboration diagram for TheoreticalSpectrumGenerationDialog:

Classes
struct	CheckBox
	struct for all information about a check box of an ion More...

Public Types
enum class	SequenceType { PEPTIDE , RNA , METABOLITE }
	type of the input sequence (corresponds to the value of the combo box 'ui_->seq_type') More...

Public Member Functions
	TheoreticalSpectrumGenerationDialog ()
	Constructor. More...
	~TheoreticalSpectrumGenerationDialog () override
	Destructor. More...
const MSSpectrum &	getSpectrum () const
	returns the calculated spectrum More...
const String	getSequence () const
	returns the input sequence (is public for TOPPView) More...

Protected Slots
void	modelChanged_ ()
	for isotope model changes More...
void	seqTypeSwitch_ ()
	for sequence type changes (combo box) More...
void	listWidgetItemClicked_ (QListWidgetItem *item)
	change check state of check box on widget click More...
void	calculateSpectrum_ ()
	calculates the spectrum More...

Private Member Functions
Param	getParam_ () const
	calculate parameters from UI elements More...
void	updateIonTypes_ ()

Private Attributes
Ui::TheoreticalSpectrumGenerationDialogTemplate *	ui_
	UI. More...
SequenceType	seq_type_
	save current sequence setting More...
const std::array< CheckBox, 12 >	check_boxes_
MSSpectrum	spec_
	member to save the calculated spectrum to More...

Friends
class	TestTSGDialog

Detailed Description

Dialog which allows to enter an AA or NA sequence and generates a theoretical spectrum for it.

Member Enumeration Documentation

SequenceType

enum SequenceType

strong

type of the input sequence (corresponds to the value of the combo box 'ui_->seq_type')

Enumerator
PEPTIDE
RNA
METABOLITE

Constructor & Destructor Documentation

TheoreticalSpectrumGenerationDialog()

TheoreticalSpectrumGenerationDialog

(

)

Constructor.

~TheoreticalSpectrumGenerationDialog()

~TheoreticalSpectrumGenerationDialog ( )

override

Destructor.

Member Function Documentation

calculateSpectrum_

void calculateSpectrum_ ( )

protectedslot

calculates the spectrum

getParam_()

Param getParam_ ( ) const

private

calculate parameters from UI elements

getSequence()

const String getSequence

(

)

const

returns the input sequence (is public for TOPPView)

Referenced by TOPPViewBase::showSpectrumGenerationDialog().

getSpectrum()

const MSSpectrum& getSpectrum

(

)

const

returns the calculated spectrum

Referenced by TOPPViewBase::showSpectrumGenerationDialog().

listWidgetItemClicked_

void listWidgetItemClicked_ ( QListWidgetItem *  item )

protectedslot

change check state of check box on widget click

modelChanged_

void modelChanged_ ( )

protectedslot

for isotope model changes

seqTypeSwitch_

void seqTypeSwitch_ ( )

protectedslot

for sequence type changes (combo box)

updateIonTypes_()

void updateIonTypes_ ( )

private

iterates through 'check_boxes_' and en-/disables check boxes and corresponding spin boxes (and their labels)

Friends And Related Function Documentation

TestTSGDialog

friend class TestTSGDialog

friend

Member Data Documentation

check_boxes_

const std::array<CheckBox, 12> check_boxes_

private

array of TSGDialog::CheckBox

Note: Ordering has to be the same as in the UI!

seq_type_

SequenceType seq_type_

private

save current sequence setting

spec_

MSSpectrum spec_

private

member to save the calculated spectrum to

ui_

Ui::TheoreticalSpectrumGenerationDialogTemplate* ui_

private

UI.