Handles the management of a multidimensional range, e.g. RangeMZ and RangeIntensity for spectra. More...

#include <OpenMS/KERNEL/RangeManager.h>

Inheritance diagram for RangeManager< RangeBases >:

Collaboration diagram for RangeManager< RangeBases >:

Public Types
using	ThisRangeType = RangeManager< RangeBases... >

Public Member Functions
bool	operator== (const RangeManager &rhs) const

bool	operator!= (const RangeManager &rhs) const

template<typename... RangeBasesOther>
bool	assignUnsafe (const RangeManager< RangeBasesOther... > &rhs)

template<typename... RangeBasesOther>
auto &	assign (const RangeManager< RangeBasesOther... > &rhs)

template<typename... RangeBasesOther>
bool	extendUnsafe (const RangeManager< RangeBasesOther... > &rhs)

template<typename... RangeBasesOther>
void	extend (const RangeManager< RangeBasesOther... > &rhs)

void	scaleBy (const double factor)
	calls RangeBase::scale() for each dimension More...

void	minSpanIfSingular (const double min_span)
	If any dimension is a single point, e.g. min==max, then extend this dimension by `min_span` / 2 on either side. More...

template<typename... RangeBasesOther>
bool	pushIntoUnsafe (const RangeManager< RangeBasesOther... > &rhs)

template<typename... RangeBasesOther>
void	pushInto (const RangeManager< RangeBasesOther... > &sandbox)

template<typename... RangeBasesOther>
bool	clampToUnsafe (const RangeManager< RangeBasesOther... > &rhs)

template<typename... RangeBasesOther>
void	clampTo (const RangeManager< RangeBasesOther... > &rhs)

const RangeBase &	getRangeForDim (MSDim dim) const
	obtain a range dimension at runtime using `dim` More...

RangeBase &	getRangeForDim (MSDim dim)
	obtain a range dimension at runtime using `dim` More...

HasRangeType	hasRange () const
	is any/some/all dimension in this range populated? More...

template<typename... RangeBasesOther>
bool	containsAll (const RangeManager< RangeBasesOther... > &rhs) const

void	clearRanges ()
	Resets all ranges. More...

ThisRangeType &	clear (const DIM_UNIT range)

void	printRange (std::ostream &out) const
	print each dimension (base classes) to a stream More...

Protected Member Functions
template<typename Visitor >
void	for_each_base_ (Visitor &&visitor)
	use fold expression to iterate over all RangeBases of RangeManager and apply a lambda (Visitor) for each one More...

template<typename Visitor >
void	for_each_base_ (Visitor &&visitor) const
	.. and a const version More...

Static Protected Member Functions
template<typename Visitor >
static void	static_for_each_base_ (Visitor &&visitor)
	use fold expression to iterate over all RangeBases of RangeManager and apply a lambda (Visitor) for each one (for static members) More...

Detailed Description

template<typename... RangeBases>
class OpenMS::RangeManager< RangeBases >

Handles the management of a multidimensional range, e.g. RangeMZ and RangeIntensity for spectra.

Instantiate it with the dimensions which are supported/required, e.g. RangeManager<RangeRT, RangeMZ> range_spec for a spectrum and use the strongly typed features, such as range_spec.getMaxRT()/setMaxRT(500.0) or range_spec.extend(RangeMZ{100, 1500}).

Use RangeManagerContainer as a base class for all peak and feature containers like MSSpectrum, MSExperiment and FeatureMap.

The implementation uses non-virtual multiple inheritance using variadic templates. Each dimension, e.g. RangeRT, is inherited from, thus all members of the base class become accessible in the RangeManager, e.g. getMaxRT(). Operations (e.g. assignment, or extension of ranges) across RangeManagers with a different, yet overlapping set of base classes is enabled using fold expressions and constexpr evaluations, which are resolved at compile time (see for_each_base_ member function).

Member Typedef Documentation

◆ ThisRangeType

using ThisRangeType = RangeManager<RangeBases...>

Member Function Documentation

◆ assign()

auto& assign ( const RangeManager< RangeBasesOther... > & rhs )

inline

copy all overlapping dimensions from rhs to this instance. Dimensions which are not contained in rhs are left untouched.

Parameters

rhs	Range to copy from

Exceptions

Exception::InvalidRange if no dimensions overlapped

References RangeManager< RangeBases >::assignUnsafe().

Referenced by LayerDataChrom::getRange(), LayerDataConsensus::getRange(), LayerDataFeature::getRange(), LayerDataIonMobility::getRange(), LayerDataPeak::getRange(), LayerData1DChrom::getRange1D(), LayerData1DIonMobility::getRange1D(), LayerData1DPeak::getRange1D(), LayerData1DChrom::getRangeForArea(), LayerData1DIonMobility::getRangeForArea(), LayerData1DPeak::getRangeForArea(), and DimMapper< N_DIM >::mapRange().

◆ assignUnsafe()

bool assignUnsafe ( const RangeManager< RangeBasesOther... > & rhs )

inline

copy all overlapping dimensions from rhs to this instance. Dimensions which are not contained in rhs are left untouched.

Parameters

rhs	Range to copy from

Returns: true if one or more dimensions overlapped

References RangeManager< RangeBases >::for_each_base_().

Referenced by RangeManager< RangeBases >::assign().

◆ clampTo()

void clampTo ( const RangeManager< RangeBasesOther... > & rhs )

inline

Clamp min/max of all overlapping dimensions to min/max of rhs. This may tighten the range (even to a single point). Dimensions which are not contained in rhs or where rhs is empty are left untouched.

Parameters

rhs	Range to clamp to

Exceptions

Exception::InvalidRange if no dimensions overlapped

References RangeManager< RangeBases >::clampToUnsafe().

Referenced by RangeManager< RangeBases >::clampToUnsafe().

◆ clampToUnsafe()

bool clampToUnsafe ( const RangeManager< RangeBasesOther... > & rhs )

inline

Clamp min/max of all overlapping dimensions to min/max of rhs Dimensions which are not contained in rhs or where rhs is empty are left untouched.

Parameters

rhs	Range to clamp to

Returns: true if dimensions overlapped, false otherwise

References RangeManager< RangeBases >::clampTo(), and RangeManager< RangeBases >::for_each_base_().

Referenced by RangeManager< RangeBases >::clampTo().

◆ clear()

ThisRangeType& clear ( const DIM_UNIT range )

inline

Resets the dimension of the given range. Any type of ion mobility in range will clear the RTMobility dimension. If the range is not contained in this class, then nothing happens.

References RangeBase::clear(), OpenMS::FAIMS_CV, OpenMS::IM_MS, OpenMS::IM_VSSC, OpenMS::INT, OpenMS::MZ, and OpenMS::RT.

◆ clearRanges()

void clearRanges ( )

inline

Resets all ranges.

References RangeManager< RangeBases >::for_each_base_().

Referenced by Plot1DCanvas::recalculateRanges_().

◆ containsAll()

bool containsAll ( const RangeManager< RangeBasesOther... > & rhs ) const

inline

Are all dimensions of rhs (which overlap with this Range) contained in this range? An empty dimension is considered contained in the other dimension (even if that one is empty as well). If only all overlapping dimensions are empty, true is returned.

Exceptions

Exception::InvalidRange if no dimensions overlap

References RangeManager< RangeBases >::for_each_base_().

◆ extend()

void extend ( const RangeManager< RangeBasesOther... > & rhs )

inline

extend all dimensions which overlap with rhs to contain the range of rhs Dimensions which are not contained in rhs are left untouched.

Parameters

rhs	Range to extend from

Exceptions

Exception::InvalidRange if no dimensions overlapped

References RangeManager< RangeBases >::extendUnsafe().

Referenced by Plot1DCanvas::recalculateRanges_().

◆ extendUnsafe()

bool extendUnsafe ( const RangeManager< RangeBasesOther... > & rhs )

inline

extend all dimensions which overlap with rhs to contain the range of rhs Dimensions which are not contained in rhs are left untouched.

Parameters

rhs	Range to extend from

Returns: false if no dimensions overlapped

References RangeManager< RangeBases >::for_each_base_().

Referenced by RangeManager< RangeBases >::extend().

◆ for_each_base_() [1/2]

void for_each_base_ ( Visitor && visitor )

inlineprotected

use fold expression to iterate over all RangeBases of RangeManager and apply a lambda (Visitor) for each one

Referenced by RangeManager< RangeBases >::assignUnsafe(), RangeManager< RangeBases >::clampToUnsafe(), RangeManager< RangeBases >::clearRanges(), RangeManager< RangeBases >::containsAll(), RangeManager< RangeBases >::extendUnsafe(), RangeManager< RangeBases >::hasRange(), RangeManager< RangeBases >::minSpanIfSingular(), RangeManager< RangeBases >::operator==(), RangeManager< RangeBases >::printRange(), RangeManager< RangeBases >::pushIntoUnsafe(), and RangeManager< RangeBases >::scaleBy().

◆ for_each_base_() [2/2]

void for_each_base_ ( Visitor && visitor ) const

inlineprotected

.. and a const version

◆ getRangeForDim() [1/2]

RangeBase& getRangeForDim ( MSDim dim )

inline

obtain a range dimension at runtime using dim

References RangeManager< RangeBases >::static_for_each_base_().

◆ getRangeForDim() [2/2]

const RangeBase& getRangeForDim ( MSDim dim ) const

inline

obtain a range dimension at runtime using dim

References RangeManager< RangeBases >::static_for_each_base_().

Referenced by DimRT::map(), DimMZ::map(), DimINT::map(), and DimIM::map().

◆ hasRange()

HasRangeType hasRange ( ) const

inline

is any/some/all dimension in this range populated?

References OpenMS::ALL, RangeManager< RangeBases >::for_each_base_(), OpenMS::NONE, and OpenMS::SOME.

◆ minSpanIfSingular()

void minSpanIfSingular ( const double min_span )

inline

If any dimension is a single point, e.g. min==max, then extend this dimension by min_span / 2 on either side.

Empty dimensions remain unchanged.

See also: DimBase::minSpanIfSingular

References RangeManager< RangeBases >::for_each_base_().

Referenced by Plot1DCanvas::recalculateRanges_().

◆ operator!=()

bool operator!= ( const RangeManager< RangeBases > & rhs ) const

inline

References RangeManager< RangeBases >::operator==().

◆ operator==()

bool operator== ( const RangeManager< RangeBases > & rhs ) const

inline

References RangeManager< RangeBases >::for_each_base_().

Referenced by RangeManager< RangeBases >::operator!=().

◆ printRange()

void printRange ( std::ostream & out ) const

inline

print each dimension (base classes) to a stream

References RangeManager< RangeBases >::for_each_base_().

Referenced by OpenMS::operator<<().

◆ pushInto()

void pushInto ( const RangeManager< RangeBasesOther... > & sandbox )

inline

Move range of *this to min/max of sandbox, without changing the span, if possible. This does tighten the range unless sandbox's ranges are smaller than *this. Dimensions which are not contained in sandbox or are empty are left untouched.

Parameters

sandbox Range to translate/move the current range into

Exceptions

Exception::InvalidRange if no dimensions overlapped

References RangeManager< RangeBases >::pushIntoUnsafe().

Referenced by Area< N_DIM >::pushInto(), and RangeManager< RangeBases >::pushIntoUnsafe().

◆ pushIntoUnsafe()

bool pushIntoUnsafe ( const RangeManager< RangeBasesOther... > & rhs )

inline

Move range of *this to min/max of rhs, without changing the span, if possible. This does tighten the range unless rhs's ranges are smaller than *this. Dimensions which are not contained in rhs or are empty are left untouched.

Parameters

rhs	Range to translate/move the current range into

Returns: true if dimensions overlapped, false otherwise

References RangeManager< RangeBases >::for_each_base_(), and RangeManager< RangeBases >::pushInto().

Referenced by RangeManager< RangeBases >::pushInto().

◆ scaleBy()

void scaleBy ( const double factor )

inline

calls RangeBase::scale() for each dimension

References RangeManager< RangeBases >::for_each_base_().

Referenced by Plot1DCanvas::recalculateRanges_().

◆ static_for_each_base_()

static void static_for_each_base_ ( Visitor && visitor )

inlinestaticprotected

use fold expression to iterate over all RangeBases of RangeManager and apply a lambda (Visitor) for each one (for static members)

Referenced by RangeManager< RangeBases >::getRangeForDim().

Public Types

Public Member Functions

Protected Member Functions

Static Protected Member Functions

Detailed Description

template<typename... RangeBases> class OpenMS::RangeManager< RangeBases >

Member Typedef Documentation

◆ ThisRangeType

Member Function Documentation

◆ assign()

◆ assignUnsafe()

◆ clampTo()

◆ clampToUnsafe()

◆ clear()

◆ clearRanges()

◆ containsAll()

◆ extend()

◆ extendUnsafe()

◆ for_each_base_() [1/2]

◆ for_each_base_() [2/2]

◆ getRangeForDim() [1/2]

◆ getRangeForDim() [2/2]

◆ hasRange()

◆ minSpanIfSingular()

◆ operator!=()

◆ operator==()

◆ printRange()

◆ pushInto()

◆ pushIntoUnsafe()

◆ scaleBy()

◆ static_for_each_base_()

template<typename... RangeBases>
class OpenMS::RangeManager< RangeBases >