Description of the settings a MS Instrument was run with. More...

#include <OpenMS/METADATA/InstrumentSettings.h>

Inheritance diagram for InstrumentSettings:

Collaboration diagram for InstrumentSettings:

Public Types
enum	ScanMode { UNKNOWN , MASSSPECTRUM , MS1SPECTRUM , MSNSPECTRUM , SIM , SRM , CRM , CNG , CNL , PRECURSOR , EMC , TDF , EMR , EMISSION , ABSORPTION , SIZE_OF_SCANMODE }
	scan mode More...

Public Member Functions
	InstrumentSettings ()
	Constructor. More...

	InstrumentSettings (const InstrumentSettings &)=default
	Copy constructor. More...

	InstrumentSettings (InstrumentSettings &&)=default
	Move constructor. More...

	~InstrumentSettings ()
	Destructor. More...

InstrumentSettings &	operator= (const InstrumentSettings &)=default
	Assignment operator. More...

InstrumentSettings &	operator= (InstrumentSettings &&) &=default
	Move assignment operator. More...

bool	operator== (const InstrumentSettings &rhs) const
	Equality operator. More...

bool	operator!= (const InstrumentSettings &rhs) const
	Equality operator. More...

ScanMode	getScanMode () const
	returns the scan mode More...

void	setScanMode (ScanMode scan_mode)
	sets the scan mode More...

bool	getZoomScan () const
	return if this scan is a zoom (enhanced resolution) scan More...

void	setZoomScan (bool zoom_scan)
	sets if this scan is a zoom (enhanced resolution) scan More...

IonSource::Polarity	getPolarity () const
	returns the polarity More...

void	setPolarity (IonSource::Polarity polarity)
	sets the polarity More...

const std::vector< ScanWindow > &	getScanWindows () const
	returns a const reference to the m/z scan windows More...

std::vector< ScanWindow > &	getScanWindows ()
	returns a mutable reference to the m/z scan windows More...

void	setScanWindows (std::vector< ScanWindow > scan_windows)
	sets the m/z scan windows More...

Public Member Functions inherited from MetaInfoInterface
	MetaInfoInterface ()
	Constructor. More...

	MetaInfoInterface (const MetaInfoInterface &rhs)
	Copy constructor. More...

	MetaInfoInterface (MetaInfoInterface &&) noexcept
	Move constructor. More...

	~MetaInfoInterface ()
	Destructor. More...

MetaInfoInterface &	operator= (const MetaInfoInterface &rhs)
	Assignment operator. More...

MetaInfoInterface &	operator= (MetaInfoInterface &&) noexcept
	Move assignment operator. More...

void	swap (MetaInfoInterface &rhs)
	Swap contents. More...

bool	operator== (const MetaInfoInterface &rhs) const
	Equality operator. More...

bool	operator!= (const MetaInfoInterface &rhs) const
	Equality operator. More...

const DataValue &	getMetaValue (const String &name) const
	Returns the value corresponding to a string, or DataValue::EMPTY if not found. More...

DataValue	getMetaValue (const String &name, const DataValue &default_value) const
	Returns the value corresponding to a string, or a default value (e.g.: DataValue::EMPTY) if not found More...

const DataValue &	getMetaValue (UInt index) const
	Returns the value corresponding to the index, or DataValue::EMPTY if not found. More...

DataValue	getMetaValue (UInt index, const DataValue &default_value) const
	Returns the value corresponding to the index, or a default value (e.g.: DataValue::EMPTY) if not found More...

bool	metaValueExists (const String &name) const
	Returns whether an entry with the given name exists. More...

bool	metaValueExists (UInt index) const
	Returns whether an entry with the given index exists. More...

void	setMetaValue (const String &name, const DataValue &value)
	Sets the DataValue corresponding to a name. More...

void	setMetaValue (UInt index, const DataValue &value)
	Sets the DataValue corresponding to an index. More...

void	removeMetaValue (const String &name)
	Removes the DataValue corresponding to `name` if it exists. More...

void	removeMetaValue (UInt index)
	Removes the DataValue corresponding to `index` if it exists. More...

void	addMetaValues (const MetaInfoInterface &from)
	function to copy all meta values from one object to this one More...

void	getKeys (std::vector< String > &keys) const
	Fills the given vector with a list of all keys for which a value is set. More...

void	getKeys (std::vector< UInt > &keys) const
	Fills the given vector with a list of all keys for which a value is set. More...

bool	isMetaEmpty () const
	Returns if the MetaInfo is empty. More...

void	clearMetaInfo ()
	Removes all meta values. More...

Static Public Attributes
static const std::string	NamesOfScanMode [SIZE_OF_SCANMODE]
	Names of scan modes. More...

Protected Attributes
ScanMode	scan_mode_

bool	zoom_scan_

IonSource::Polarity	polarity_

std::vector< ScanWindow >	scan_windows_

Protected Attributes inherited from MetaInfoInterface
MetaInfo *	meta_
	Pointer to the MetaInfo object (0 by default) More...

Additional Inherited Members
Static Public Member Functions inherited from MetaInfoInterface
static MetaInfoRegistry &	metaRegistry ()
	Returns a reference to the MetaInfoRegistry. More...

Protected Member Functions inherited from MetaInfoInterface
void	createIfNotExists_ ()
	Creates the MetaInfo object if it does not exist. More...

Detailed Description

Description of the settings a MS Instrument was run with.

Member Enumeration Documentation

◆ ScanMode

enum ScanMode

scan mode

Enumerator
UNKNOWN	Unknown scan method.
MASSSPECTRUM	general spectrum type
MS1SPECTRUM	full scan mass spectrum, is a "mass spectrum" Synonyms: 'full spectrum', 'Q1 spectrum', 'Q3 spectrum', 'Single-Stage Mass Spectrometry'
MSNSPECTRUM	MS2+ mass spectrum, is a "mass spectrum".
SIM	Selected ion monitoring scan Synonyms: 'Multiple ion monitoring scan', 'SIM scan', 'MIM scan'.
SRM	Selected reaction monitoring scan Synonyms: 'Multiple reaction monitoring scan', 'SRM scan', 'MRM scan'.
CRM	Consecutive reaction monitoring scan Synonyms: 'CRM scan'.
CNG	Constant neutral gain scan Synonyms: 'CNG scan'.
CNL	Constant neutral loss scan Synonyms: 'CNG scan'.
PRECURSOR	Precursor ion scan.
EMC	Enhanced multiply charged scan.
TDF	Time-delayed fragmentation scan.
EMR	Electromagnetic radiation scan Synonyms: 'EMR spectrum'.
EMISSION	Emission scan.
ABSORPTION	Absorption scan.
SIZE_OF_SCANMODE

Constructor & Destructor Documentation

◆ InstrumentSettings() [1/3]

InstrumentSettings ( )

Constructor.

◆ InstrumentSettings() [2/3]

InstrumentSettings ( const InstrumentSettings & )

default

Copy constructor.

◆ InstrumentSettings() [3/3]

InstrumentSettings ( InstrumentSettings && )

default

Move constructor.

◆ ~InstrumentSettings()

~InstrumentSettings ( )

Destructor.

Member Function Documentation

◆ getPolarity()

IonSource::Polarity getPolarity ( ) const

returns the polarity

Referenced by HasScanPolarity< SpectrumType >::operator()().

◆ getScanMode()

ScanMode getScanMode ( ) const

returns the scan mode

Referenced by HasScanMode< SpectrumType >::operator()().

◆ getScanWindows() [1/2]

std::vector<ScanWindow>& getScanWindows ( )

returns a mutable reference to the m/z scan windows

◆ getScanWindows() [2/2]

const std::vector<ScanWindow>& getScanWindows ( ) const

returns a const reference to the m/z scan windows

◆ getZoomScan()

bool getZoomScan ( ) const

return if this scan is a zoom (enhanced resolution) scan

Referenced by IsZoomSpectrum< SpectrumType >::operator()().

◆ operator!=()

bool operator!= ( const InstrumentSettings & rhs ) const

Equality operator.

◆ operator=() [1/2]

InstrumentSettings& operator= ( const InstrumentSettings & )

default

Assignment operator.

◆ operator=() [2/2]

InstrumentSettings& operator= ( InstrumentSettings && ) &

default

Move assignment operator.

◆ operator==()

bool operator== ( const InstrumentSettings & rhs ) const

Equality operator.

◆ setPolarity()

void setPolarity ( IonSource::Polarity polarity )

sets the polarity

Referenced by XMassFile::load().

◆ setScanMode()

void setScanMode ( ScanMode scan_mode )

sets the scan mode

Referenced by XMassFile::load().

◆ setScanWindows()

void setScanWindows ( std::vector< ScanWindow > scan_windows )

sets the m/z scan windows

◆ setZoomScan()

void setZoomScan ( bool zoom_scan )

sets if this scan is a zoom (enhanced resolution) scan

Referenced by XMassFile::load().

Member Data Documentation

◆ NamesOfScanMode

const std::string NamesOfScanMode[SIZE_OF_SCANMODE]

static

Names of scan modes.

◆ polarity_

IonSource::Polarity polarity_

protected

◆ scan_mode_

ScanMode scan_mode_

protected

◆ scan_windows_

std::vector<ScanWindow> scan_windows_

protected

◆ zoom_scan_

bool zoom_scan_

protected

Public Types

Public Member Functions

Static Public Attributes

Protected Attributes

Additional Inherited Members

Detailed Description

Member Enumeration Documentation

◆ ScanMode

Constructor & Destructor Documentation

◆ InstrumentSettings() [1/3]

◆ InstrumentSettings() [2/3]

◆ InstrumentSettings() [3/3]

◆ ~InstrumentSettings()

Member Function Documentation

◆ getPolarity()

◆ getScanMode()

◆ getScanWindows() [1/2]

◆ getScanWindows() [2/2]

◆ getZoomScan()

◆ operator!=()

◆ operator=() [1/2]

◆ operator=() [2/2]

◆ operator==()

◆ setPolarity()

◆ setScanMode()

◆ setScanWindows()

◆ setZoomScan()

Member Data Documentation

◆ NamesOfScanMode

◆ polarity_

◆ scan_mode_

◆ scan_windows_

◆ zoom_scan_