Load files containing runConcentration data. More...

#include <OpenMS/FORMAT/AbsoluteQuantitationStandardsFile.h>

Public Member Functions
	AbsoluteQuantitationStandardsFile ()=default

virtual	~AbsoluteQuantitationStandardsFile ()=default

void	load (const String &filename, std::vector< AbsoluteQuantitationStandards::runConcentration > &run_concentrations) const
	Load runConcentration data from a file and save it in memory. More...

Protected Member Functions
AbsoluteQuantitationStandards::runConcentration	extractRunFromLine_ (const StringList &line, const std::map< String, Size > &headers) const
	Extract one runConcentration from a single line. More...

Detailed Description

Load files containing runConcentration data.

Constructor & Destructor Documentation

◆ AbsoluteQuantitationStandardsFile()

AbsoluteQuantitationStandardsFile ( )

default

◆ ~AbsoluteQuantitationStandardsFile()

virtual ~AbsoluteQuantitationStandardsFile ( )

virtualdefault

Member Function Documentation

◆ extractRunFromLine_()

AbsoluteQuantitationStandards::runConcentration extractRunFromLine_	(	const StringList &	line,
		const std::map< String, Size > &	headers
	)		const

protected

Extract one runConcentration from a single line.

Any missing information is going to be filled with default data:

an empty string for String data
the value 0.0 for concentration values
the value 1.0 for dilution factor

The headers argument makes sure that the data is taken from the correct column/position in line.

Parameters

[in]	line	A list of strings each containing a column's info
[in]	headers	A mapping from header name to position in the StringList given in input

◆ load()

void load	(	const String &	filename,
		std::vector< AbsoluteQuantitationStandards::runConcentration > &	run_concentrations
	)		const

Load runConcentration data from a file and save it in memory.

An example of the format expected:

sample_name,component_name,IS_component_name,actual_concentration,IS_actual_concentration,concentration_units,dilution_factor 150516_CM1_Level1,23dpg.23dpg_1.Light,23dpg.23dpg_1.Heavy,0,1,uM,1 150516_CM1_Level1,2mcit.2mcit_1.Light,2mcit.2mcit_1.Heavy,0,1,uM,1 150516_CM1_Level1,2obut.2obut_1.Light,2obut.2obut_1.Heavy,0,1,uM,1