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OpenMS
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A vertex representing an output file list. More...
#include <OpenMS/VISUAL/TOPPASOutputFileListVertex.h>
Public Member Functions | |
| virtual std::unique_ptr< TOPPASVertex > | clone () const override |
| Make a copy of this vertex on the heap and return a pointer to it (useful for copying nodes) More... | |
| String | getName () const override |
| returns "OutputFileVertex" More... | |
| void | paint (QPainter *painter, const QStyleOptionGraphicsItem *option, QWidget *widget) override |
| QRectF | boundingRect () const override |
| Returns the bounding rectangle of this item. More... | |
| void | run () override |
| Called when the parent node has finished execution. More... | |
 Public Member Functions inherited from TOPPASOutputVertex | |
| TOPPASOutputVertex ()=default | |
| Default C'tor. More... | |
| TOPPASOutputVertex (const TOPPASOutputVertex &rhs) | |
| Copy constructor. More... | |
| TOPPASOutputVertex & | operator= (const TOPPASOutputVertex &rhs) |
| Assignment operator. More... | |
| void | reset (bool reset_all_files=false) override |
| void | mouseDoubleClickEvent (QGraphicsSceneMouseEvent *) override |
| opens the folder containing the output data More... | |
| String | getFullOutputDirectory () const |
| Returns the full directory (including preceding output path as selected by user and a trailing '/') More... | |
| String | getOutputDir () const |
| Returns the directory where the output files are stored (includes a trailing '/') More... | |
| String | createOutputDir () const |
| Creates the output directory for this node (includes a trailing '/') More... | |
| void | setTopoNr (UInt nr) override |
| Sets the topological sort number and removes invalidated tmp files. More... | |
| void | openContainingFolder () const |
| Opens the folders of the output files. More... | |
| void | setOutputFolderName (const QString &name) |
| const QString & | getOutputFolderName () const |
| return the output folder where results are written More... | |
| Public Member Functions inherited from TOPPASVertex | |
| TOPPASVertex () | |
| Default Constructor. More... | |
| TOPPASVertex (const TOPPASVertex &rhs) | |
| Copy constructor. More... | |
| ~TOPPASVertex () override=default | |
| Destructor. More... | |
| TOPPASVertex & | operator= (const TOPPASVertex &rhs) |
| Assignment operator. More... | |
| void | paint (QPainter *painter, const QStyleOptionGraphicsItem *, QWidget *, bool round_shape=true) |
| base paint method for all derived classes. should be called first in child-class paint More... | |
| bool | buildRoundPackages (RoundPackages &pkg, String &error_msg) |
| bool | isUpstreamFinished () const |
| check if all upstream nodes are ready to go ( 'finished_' is true) More... | |
| QPainterPath | shape () const final |
| Returns a more precise shape. More... | |
| ConstEdgeIterator | outEdgesBegin () const |
| Returns begin() iterator of outgoing edges. More... | |
| ConstEdgeIterator | outEdgesEnd () const |
| Returns end() iterator of outgoing edges. More... | |
| ConstEdgeIterator | inEdgesBegin () const |
| Returns begin() iterator of incoming edges. More... | |
| ConstEdgeIterator | inEdgesEnd () const |
| Returns end() iterator of incoming edges. More... | |
| Size | incomingEdgesCount () |
| Returns the number of incoming edges. More... | |
| Size | outgoingEdgesCount () |
| Returns the number of outgoing edges. More... | |
| void | addInEdge (TOPPASEdge *edge) |
| Adds an incoming edge. More... | |
| void | addOutEdge (TOPPASEdge *edge) |
| Adds an outgoing edge. More... | |
| void | removeInEdge (TOPPASEdge *edge) |
| Removes an incoming edge. More... | |
| void | removeOutEdge (TOPPASEdge *edge) |
| Removes an outgoing edge. More... | |
| DFS_COLOR | getDFSColor () |
| Returns the DFS color of this node. More... | |
| void | setDFSColor (DFS_COLOR color) |
| Sets the DFS color of this node. More... | |
| TOPPASVertex::SUBSTREESTATUS | getSubtreeStatus () const |
| Checks if all tools in the subtree below this node are finished. More... | |
| bool | isTopoSortMarked () const |
| Returns whether the vertex has been marked already (during topological sort) More... | |
| void | setTopoSortMarked (bool b) |
| (Un)marks the vertex (during topological sort) More... | |
| UInt | getTopoNr () const |
| Returns the topological sort number. More... | |
| virtual void | markUnreachable () |
| Marks this node (and everything further downstream) as unreachable. Overridden behavior in mergers. More... | |
| bool | isReachable () const |
| Returns whether this node is reachable. More... | |
| bool | isFinished () const |
| Returns whether this node has already been processed during the current pipeline execution. More... | |
| virtual bool | invertRecylingMode () |
| invert status of recycling More... | |
| bool | isRecyclingEnabled () const |
| get status of recycling More... | |
| void | setRecycling (const bool is_enabled) |
| set status of recycling More... | |
| QStringList | getFileNames (int param_index, int round) const |
| gets filenames for a certain output parameter (from this vertex), for a certain TOPPAS round More... | |
| QStringList | getFileNames () const |
| get all output files for all parameters for all rounds More... | |
| const RoundPackages & | getOutputFiles () const |
| bool | allInputsReady () const |
| check if all upstream nodes are finished More... | |
Additional Inherited Members | |
| Public Types inherited from TOPPASVertex | |
| enum | DFS_COLOR { DFS_WHITE , DFS_GRAY , DFS_BLACK } |
| The color of a vertex during depth-first search. More... | |
| enum | SUBSTREESTATUS { TV_ALLFINISHED , TV_UNFINISHED , TV_UNFINISHED_INBRANCH } |
| The color of a vertex during depth-first search. More... | |
| typedef QList< TOPPASEdge * > | EdgeContainer |
| The container for in/out edges. More... | |
| typedef EdgeContainer::iterator | EdgeIterator |
| A mutable iterator for in/out edges. More... | |
| typedef EdgeContainer::const_iterator | ConstEdgeIterator |
| A const iterator for in/out edges. More... | |
| using | RoundPackage = std::map< Int, VertexRoundPackage > |
| using | RoundPackageConstIt = RoundPackage::const_iterator |
| using | RoundPackageIt = RoundPackage::iterator |
| using | RoundPackages = std::vector< RoundPackage > |
| all information a node needs to process all rounds More... | |
| Public Slots inherited from TOPPASOutputVertex | |
| void | inEdgeHasChanged () override |
| Public Slots inherited from TOPPASVertex | |
| virtual void | inEdgeHasChanged () |
| Called by an incoming edge when it has changed. More... | |
| virtual void | outEdgeHasChanged () |
| Called by an outgoing edge when it has changed. More... | |
| Signals inherited from TOPPASOutputVertex | |
| void | outputFileWritten (const String &file) |
| Emitted when an output file was written. More... | |
| void | outputFolderNameChanged () |
| Emitted when user has changed the output folder name (i.e. output dir needs to be newly created and packages updates) More... | |
| Signals inherited from TOPPASVertex | |
| void | clicked () |
| Emitted when this item is clicked. More... | |
| void | released () |
| Emitted when this item is released. More... | |
| void | hoveringEdgePosChanged (const QPointF &new_pos) |
| Emitted when the position of the hovering edge changes. More... | |
| void | newHoveringEdge (const QPointF &pos) |
| Emitted when a new out edge is supposed to be created. More... | |
| void | finishHoveringEdge () |
| Emitted when the mouse is released after having dragged a new edge somewhere. More... | |
| void | somethingHasChanged () |
| Emitted when something has changed. More... | |
| void | itemDragged (qreal dx, qreal dy) |
| Emitted when the item is dragged. More... | |
| void | parameterChanged (const bool invalidates_running_pipeline) |
| Protected Member Functions inherited from TOPPASVertex | |
| void | mouseReleaseEvent (QGraphicsSceneMouseEvent *e) override |
| void | mousePressEvent (QGraphicsSceneMouseEvent *e) override |
| void | mouseDoubleClickEvent (QGraphicsSceneMouseEvent *e) override |
| void | mouseMoveEvent (QGraphicsSceneMouseEvent *e) override |
| void | contextMenuEvent (QGraphicsSceneContextMenuEvent *event) override |
| virtual void | moveNewEdgeTo_ (const QPointF &pos) |
Moves the target pos of the edge which is just being created to pos. More... | |
| String | get3CharsNumber_ (UInt number) const |
Returns a three character string (i.e. 001 instead of 1) for the given number. More... | |
| void | debugOut_ (const String &) const |
Displays the debug output message, if TOPPAS_DEBUG is defined. More... | |
| Protected Attributes inherited from TOPPASOutputVertex | |
| QString | output_folder_name_ |
| custom output folder name More... | |
| int | files_written_ = 0 |
| files that were already written More... | |
| int | files_total_ = 0 |
| total number of files from upstream More... | |
| Protected Attributes inherited from TOPPASVertex | |
| EdgeContainer | in_edges_ |
| The list of incoming edges. More... | |
| EdgeContainer | out_edges_ |
| The list of outgoing edges. More... | |
| bool | edge_being_created_ {false} |
| Indicates whether a new out edge is currently being created. More... | |
| QColor | pen_color_ {Qt::black} |
| The color of the pen. More... | |
| QColor | brush_color_ { Qt::lightGray} |
| The color of the brush. More... | |
| DFS_COLOR | dfs_color_ {DFS_WHITE} |
| The DFS color of this node. More... | |
| bool | topo_sort_marked_ {false} |
| "marked" flag for topological sort More... | |
| UInt | topo_nr_ |
| The number in a topological sort of the entire graph. More... | |
| RoundPackages | output_files_ |
| Stores the current output file names for each output parameter. More... | |
| int | round_total_ {-1} |
| number of rounds this node will do ('Merge All' nodes will pass everything, thus do only one round) More... | |
| int | round_counter_ {0} |
| currently finished number of rounds (TODO: do we need that?) More... | |
| bool | finished_ {false} |
| Stores whether this node has already been processed during the current pipeline execution. More... | |
| bool | reachable_ {true} |
| Indicates whether this node is reachable (i.e. there is an input node somewhere further upstream) More... | |
| bool | allow_output_recycling_ {false} |
| shall subsequent tools be allowed to recycle the output of this node to match the number of rounds imposed by other parent nodes? More... | |
A vertex representing an output file list.
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overridevirtual |
Returns the bounding rectangle of this item.
Implements TOPPASVertex.
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overridevirtual |
Make a copy of this vertex on the heap and return a pointer to it (useful for copying nodes)
Implements TOPPASVertex.
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overridevirtual |
returns "OutputFileVertex"
Implements TOPPASVertex.
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override |
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overridevirtual |
Called when the parent node has finished execution.
Reimplemented from TOPPASVertex.
1.9.1 
