Here is a list of all class members with links to the classes they belong to:

- m -

• m : IDBoostGraph::dfs_ccsplit_visitor
• m_ : mean_and_stddev
• m_data : EGHTraceFitter::EGHTraceFunctor , EmgFitter1D::EgmFitterFunctor , GaussTraceFitter::GaussTraceFunctor
• m_features : MockMRMFeature
• m_ids : SiriusMSFile::CompoundInfo
• m_ids_id : SiriusMSFile::CompoundInfo
• m_inputs : LevMarqFitter1D::GenericFunctor , TraceFitter::GenericFunctor
• m_intensity : MockFeature , MockMRMFeature
• m_intensity_vec : MockFeature
• m_library_intensities : MockTransitionGroup
• m_meta_data_ : MzTabM
• m_native_ids : MockTransitionGroup
• m_precursor_features : MockMRMFeature
• m_rt : MockFeature , MockMRMFeature
• m_rt_vec : MockFeature
• m_size : MockTransitionGroup
• m_small_molecule_data_ : MzTabM
• m_small_molecule_evidence_data_ : MzTabM
• m_small_molecule_feature_data_ : MzTabM
• m_sn_value : MockSignalToNoise
• m_values : LevMarqFitter1D::GenericFunctor , TraceFitter::GenericFunctor
• m_windows_ : TOPPViewMenu
• MAGNETIC_DEFLECTION : Instrument
• magnetic_field_strength_ : MassAnalyzer
• magnetic_fs_ : MassAnalyzerVisualizer
• main() : TOPPBase
• main_() : NucleicAcidSearchEngine , TOPPBase , TOPPFLASHDeconv , TOPPGNPSExport
• main_score : PeptideHit::PepXMLAnalysisResult
• mainlayout_ : BaseVisualizerGUI
• mainWindowNeedsUpdate() : TOPPASScene
• major_version_ : MascotXMLHandler
• makeAxes_() : Plot3DOpenGLCanvas
• makeAxesTicks_() : Plot3DOpenGLCanvas
• makeBaseFeature_() : OMSFileLoad
• makeConsensusFeature_() : QTClusterFinder
• makeDataAsStick_() : Plot3DOpenGLCanvas
• makeDataAsTopView_() : Plot3DOpenGLCanvas
• makeDataValue_() : OMSFileLoad
• makeFeatureUIDtoConsensusMapIndex_() : MQExporterHelper
• makeGridLines_() : Plot3DOpenGLCanvas
• makeGround_() : Plot3DOpenGLCanvas
• makeScanMap_() : PepXMLFile
• makeSeqTable_() : QTCluster
• makeStream() : CompressedInputSource
• MALDI : IonSource
• manager_ : MascotRemoteQuery , NetworkGetRequest
• mandatory_export_columns_ : TableView
• manhatt_score_dia : OpenSwath_Scores
• manhattanDist_() : ConfidenceScoring
• MANUAL : SignalToNoiseEstimatorMeanIterative< Container > , SignalToNoiseEstimatorMedian< Container >
• map() : DimBase , DimIM , DimINT , DimMapper< N_DIM > , DimMZ , DimRT
• map2csv() : QcMLFile
• map_ : FeatureFinderAlgorithm , FeatureFinderAlgorithmPicked , INIUpdater , FeatureXMLHandler , TOPPASResources
• map_as_2d_disabled_ : TOPPViewOpenDialog
• map_id_run_fileidx_2_msfileidx_ : MzTab::CMMzTabStream , MzTab::IDMzTabStream
• MAP_INDEX : IDRipper
• map_index : QTCluster::Element
• map_index_ : FeatureHandle , GridFeature , KDTreeFeatureMaps
• map_label_ : FeatureDeconvolution , MetaboliteFeatureDeconvolution
• map_label_inverse_ : FeatureDeconvolution , MetaboliteFeatureDeconvolution
• map_multiple_assays_ : MRMMapping
• map_points_ : ConvexHull2D
• map_precursor_to_chrom_idx_cache_ : SpectraTreeTab
• map_to_vec_index_ : IsobaricNormalizer
• MapAccPepType : MzTabFile
• MapAlignmentAlgorithmIdentification() : MapAlignmentAlgorithmIdentification
• MapAlignmentAlgorithmKD() : MapAlignmentAlgorithmKD
• MapAlignmentAlgorithmPoseClustering() : MapAlignmentAlgorithmPoseClustering
• MapAlignmentAlgorithmTreeGuided() : MapAlignmentAlgorithmTreeGuided
• MapAlignmentEvaluationAlgorithm() : MapAlignmentEvaluationAlgorithm
• MapAlignmentEvaluationAlgorithmPrecision() : MapAlignmentEvaluationAlgorithmPrecision
• MapAlignmentEvaluationAlgorithmRecall() : MapAlignmentEvaluationAlgorithmRecall
• mapBetweenMSFileNameAndMSRunIndex_() : MzTab
• mapBetweenRunAndSearchEngines_() : MzTab
• mapComponentsToConcentrations() : AbsoluteQuantitationStandards
• mapExperiment() : MRMMapping
• mapExperimentToTransitionList() : MRMFeatureFinderScoring
• mapGroupsToProteins_() : MzTab
• mapIDRunFileIndex2MSFileIndex_() : MzTab
• mapIDRunIdentifier2IDRunIndex_() : MzTab
• mapIndex() : KDTreeFeatureMaps
• MapIndex2StringType : MetaInfoRegistry
• mapped_type : HashGrid< Cluster >
• mapper_ : Area< N_DIM >
• mapping : MappingParam
• Mapping() : ProteinIdentification::Mapping
• mapping_ : MzMLHandler , SemanticValidator
• mapping_rules_ : CVMappings
• mapping_tolerance_ : FeatureFinderIdentificationAlgorithm
• MappingParam() : MappingParam
• mapPrecursorsToIdentifications() : IDMapper
• mapRange() : DimMapper< N_DIM >
• mapSearchEngineScoreToCvParam_() : MzTabFile
• mapSearchEngineToCvParam_() : MzTabFile
• MapSequenceToLines_ : TriqlerFile
• MapString2IndexType : MetaInfoRegistry
• MapType : CachedSwathFileConsumer , FeatureFinderAlgorithm , FeatureFinderAlgorithmPicked , FullSwathFileConsumer , CachedMzMLHandler , MetaInfo , MSDataSqlConsumer , MSDataWritingConsumer , MzDataFile , MzMLSwathFileConsumer , MzXMLFile , RegularSwathFileConsumer , SqMassFile
• MapType_ : EmpiricalFormula
• MapU32 : MissedCleavages
• margin() : AxisWidget
• margin_ : AxisWidget , HistogramWidget , MultiGradientSelector
• MarkerIonsType : RNPxlMarkerIonExtractor
• markUnreachable() : TOPPASMergerVertex , TOPPASSplitterVertex , TOPPASVertex
• mascot_decoy_xml_ : MascotRemoteQuery
• mascot_xml_ : MascotRemoteQuery
• MascotGenericFile() : MascotGenericFile
• MascotInfile() : MascotInfile
• MascotRemoteQuery() : MascotRemoteQuery
• MASCOTXML : FileTypes
• MascotXMLFile() : MascotXMLFile
• MascotXMLHandler() : MascotXMLHandler
• mass : AccurateMassSearchEngine::MappingEntry_ , FLASHDeconvHelperStructs::LogMzPeak , IMSIsotopeDistribution::Peak
• MASS : IsotopeDistribution
• mass2aa_ : Tagger
• mass_ : AdductInfo , Compomer , FeatureFinderAlgorithmMetaboIdent::FeatureFinderMetaboIdentCompound , Modification , PepXMLFile::AminoAcidModification , Sample
• mass_analyzers_ : Instrument
• mass_bin_min_value_ : FLASHDeconvAlgorithm
• mass_bins_ : FLASHDeconvAlgorithm
• MASS_CHROMATOGRAM : ChromatogramSettings
• mass_container : IMSAlphabet
• mass_delta : MzIdentMLDOMHandler::ModificationParam
• mass_diff_ : ChargePair
• mass_error_da : MQExporterHelper::MQCommonOutputs
• mass_error_ppm : MQExporterHelper::MQCommonOutputs
• mass_error_ppm_ : MassTraceDetection
• mass_error_unit_ : AccurateMassSearchEngine
• mass_error_value_ : AccurateMassSearchEngine
• mass_in_lcms_ : IntegerMassDecomposer< ValueType, DecompositionValueType >
• mass_interval_ : FLASHDeconvHelperStructs::PrecalculatedAveragine
• mass_iterator : IMSAlphabet
• mass_mappings_ : AccurateMassSearchEngine
• mass_position_map_ : NeighborSeq
• mass_shift_ : Tagging
• mass_shift_index_ : MultiplexIsotopicPeakPattern
• mass_shifts_ : MultiplexIsotopicPeakPattern
• mass_to_charge : MzTabPeptideSectionRow
• mass_tolerance_ : ConsensusIDAlgorithmPEPIons
• mass_trace_intensities_ : AccurateMassSearchResult
• mass_type : DBSearchParam , IMSAlphabet , IMSElement , IMSIsotopeDistribution , ProteinIdentification::SearchParameters
• mass_type_ : MascotInfile , ProteinIdentificationVisualizer
• mass_type_fragment_ : SequestInfile
• mass_type_parent_ : SequestInfile
• mass_window_width_ : FeatureFinderAlgorithmPicked
• MassAbundance : IsotopeDistribution
• MassAnalyzer() : MassAnalyzer
• MassAnalyzerVisualizer() : MassAnalyzerVisualizer
• massCorrectionTerm() : PScore
• MassDecomposition() : MassDecomposition
• MassDecompositionAlgorithm() : MassDecompositionAlgorithm
• massdev_score : OpenSwath_Scores
• massdiff_ : PepXMLFile::AminoAcidModification
• masses_container : IMSIsotopeDistribution
• masses_iterator : IMSIsotopeDistribution
• masses_type : IMSAlphabet
• MassExplainer() : MassExplainer
• MassFeatureTrace() : MassFeatureTrace
• MassIDMapping : AccurateMassSearchEngine
• massIDs : AccurateMassSearchEngine::MappingEntry_
• MassIntensityType : IsotopeLabelingMDVs
• MASSSPECTRUM : InstrumentSettings
• massToIndex_() : FLASHDeconvHelperStructs::PrecalculatedAveragine
• MassTrace : ElutionModelFitter , FeatureFinderAlgorithmMetaboIdent , FeatureFinderAlgorithmPicked , FeatureFinderIdentificationAlgorithm , MassTrace
• MasstraceCorrelator() : MasstraceCorrelator
• MassTraceDetection() : MassTraceDetection
• MasstracePointsType : MasstraceCorrelator
• MassTraces : ElutionModelFitter , FeatureFinderAlgorithmMetaboIdent , FeatureFinderAlgorithmPicked , FeatureFinderAlgorithmPickedHelperStructs::MassTraces , FeatureFinderIdentificationAlgorithm
• MassType : IdentificationData , XTandemInfile
• Match() : TargetedSpectraExtractor::Match
• match_odds : OPXLDataStructs::CrossLinkSpectrumMatch
• match_odds_alpha : OPXLDataStructs::CrossLinkSpectrumMatch
• match_odds_beta : OPXLDataStructs::CrossLinkSpectrumMatch
• match_peak_allowed_error_ : SequestInfile
• match_peak_count_ : SequestInfile
• match_peak_tolerance_ : SequestInfile
• matched_b_ions : HyperScore::PSMDetail
• matched_linear_alpha : OPXLDataStructs::CrossLinkSpectrumMatch
• matched_linear_beta : OPXLDataStructs::CrossLinkSpectrumMatch
• matched_whitelist_ : FuzzyStringComparator
• matched_xlink_alpha : OPXLDataStructs::CrossLinkSpectrumMatch
• matched_xlink_beta : OPXLDataStructs::CrossLinkSpectrumMatch
• matched_y_ions : HyperScore::PSMDetail
• matchedCurrentChain() : XQuestScores
• MatchedIterator() : MatchedIterator< CONT_T, TRAIT, CONST_T >
• matches : MorpheusScore::Result
• MatchGroupRef : IdentificationData
• matching_hmdb_ids_ : AccurateMassSearchResult
• matching_index_ : AccurateMassSearchResult
• matching_score_ : SpectralMatch
• matching_spectrum_idx_ : SpectralMatch
• matchMassTraces_() : MasstraceCorrelator
• matchModification_() : PepXMLFileMascot , ProtXMLFile
• matchOddsScore() : XQuestScores
• matchOddsScoreSimpleSpec() : XQuestScores
• matchSpectrum() : TargetedSpectraExtractor
• Matrix() : Matrix< Value >
• matrix_ : DistanceMatrix< Value >
• max : FeatureFinderAlgorithmPickedHelperStructs::TheoreticalIsotopePattern
• MAX : LPWrapper
• max : SummaryStatistics< T >
• max_ : AxisWidget , BiGaussModel , DBoundingBox< D > , DRange< D > , EmgModel , GaussModel , InIntensityRange< PeakType > , InMzRange< PeakType > , InRTRange< SpectrumType > , DIntervalBase< D > , Histogram< ValueType, BinSizeType > , RangeBase , RangeStats< VALUE_TYPE >
• max_AA_per_mod_per_peptide_ : SequestInfile
• max_aaa_ : ACTrie
• max_aaa_leftover : ACSpawn
• max_abs_charge_ : FLASHDeconvAlgorithm , PeakGroup
• max_bias_ : AbsoluteQuantitation
• max_charge : FLASHDeconvHelperStructs::MassFeature
• max_charge_ : Tagger
• max_cleavages_ : IDFilter::PeptideDigestionFilter
• max_code_length_ : RibonucleotideDB
• max_correctly_ : PosteriorErrorProbabilityModel
• max_diff_mz_ : QTClusterFinder
• max_diff_ppm : FeatureDistance::DistanceParams_
• max_diff_rt_ : QTClusterFinder
• max_difference : FeatureDistance::DistanceParams_
• max_distance_ : QTCluster::BulkData
• max_energy_ : IsInCollisionEnergyRange< SpectrumType >
• max_entries_ : RecentFilesMenu
• max_feature_intersection_ : FeatureFinderAlgorithmPicked
• max_float : Param::ParamEntry , ParameterInformation
• max_fragment_mz_ : TargetedSpectraExtractor
• max_fwhm_ : ElutionPeakDetection
• max_gap_ : Tagger
• max_gd_iter_ : EmgGradientDescent
• max_incorrectly_ : PosteriorErrorProbabilityModel
• max_int : Param::ParamEntry , ParameterInformation
• max_intensity : IDDecoyProbability::Transformation_ , LayerDataDefs::ProjectionData::Summary
• max_intensity_ : FeatureDistance , SignalToNoiseEstimatorMeanIterative< Container > , SignalToNoiseEstimatorMedian< Container >
• max_intensity_bin : IDDecoyProbability::Transformation_
• max_internal_cleavage_sites_ : SequestInfile
• max_isotope_ : CoarseIsotopePatternGenerator , ExtendedIsotopeFitter1D , ExtendedIsotopeModel , IsotopeFitter1D , IsotopeModel , SimpleTSGXLMS , TheoreticalSpectrumGenerator , TheoreticalSpectrumGeneratorXLMS
• max_isotope_index_ : FLASHDeconvHelperStructs::PrecalculatedAveragine
• max_isotope_probability_ : TheoreticalSpectrumGenerator
• max_iteration_ : LevMarqFitter1D
• max_iterations_ : TraceFitter
• max_iters_ : AbsoluteQuantitation
• max_length : DBSearchParam , LogWindow
• max_length_ : LogWindow
• max_line_width_ : IndentedStream
• max_lines_ : IndentedStream
• max_mass_ : FLASHDeconvAlgorithm
• max_missing_trace_peaks_ : FeatureFinderAlgorithmPicked
• max_mm_ : ACTrie
• max_mm_leftover : ACSpawn
• max_mods_per_peptide_ : ModificationDefinitionsSet , SequestInfile
• max_mz_ : FLASHDeconvAlgorithm
• max_neutrals_ : MassExplainer
• max_num_peaks_considered_ : MapAlignmentAlgorithmPoseClustering
• max_occurrences_ : ModificationDefinition
• max_pairwise_log_fc_ : MapAlignmentAlgorithmKD
• max_peak : FeatureFinderAlgorithmPickedHelperStructs::MassTrace
• max_pep_lens_ : SequestOutfile
• max_peptide_length_ : AScore
• max_permutations_ : AScore
• max_precursor_charge_ : XQuestResultXMLHandler , OpenPepXLAlgorithm , OpenPepXLLFAlgorithm , XTandemInfile
• max_precursor_isotope_deviation_ : IsobaricChannelExtractor
• max_precursor_mass_threashold_ : TargetedSpectraExtractor
• max_prefix_loss_leftover : ACSpawn
• max_rt : ConfidenceScoring::RTNorm_ , FeatureFinderAlgorithmPickedHelperStructs::MassTrace
• max_rt_ : FLASHDeconvAlgorithm
• max_rt_span_ : FeatureFinderAlgorithmPicked
• max_score : IDDecoyProbability::Transformation_
• max_score_ : XQuestResultXMLHandler , XFDRAlgorithm , XQuestResultXMLFile
• max_series_ : SpectrumAnnotator
• max_size() : KDTree< __K, _Val, _Acc, _Dist, _Cmp, _Alloc > , ConstRefVector< ContainerT >
• max_size_ : NucleicAcidSearchEngine::HasInvalidLength , IsInIsolationWindowSizeRange< SpectrumType >
• max_snr_abs_charge_ : PeakGroup
• max_span_ : MassExplainer
• max_tag_length_ : Tagger
• MAX_TIME : LogStreamBuf
• max_trace : FeatureFinderAlgorithmPickedHelperStructs::MassTraces
• max_trace_length_ : MassTraceDetection
• max_valid_evalue_ : XTandemInfile
• max_variable_mods_per_peptide_ : OpenPepXLAlgorithm , OpenPepXLLFAlgorithm
• maxBound() : Histogram< ValueType, BinSizeType >
• maximal_data_pool_size_ : PeakFileOptions
• maxLength() : LogWindow
• MaxLikeliFitter1D() : MaxLikeliFitter1D
• maxPosition() : DIntervalBase< D >
• maxPositive() : DPosition< D, TCoordinateType >
• maxptmsize_ : InspectInfile
• maxValue() : Histogram< ValueType, BinSizeType >
• maxX() : DIntervalBase< D >
• maxY() : DIntervalBase< D >
• MAY : CVMappingRule
• MBBegin() : Mobilogram
• MBEnd() : Mobilogram
• mc_result_ : MissedCleavages
• MD5 : SourceFile
• MDF_ALL : SpectrumMetaDataLookup
• MDF_MSLEVEL : SpectrumMetaDataLookup
• MDF_NATIVEID : SpectrumMetaDataLookup
• MDF_PRECURSORCHARGE : SpectrumMetaDataLookup
• MDF_PRECURSORMZ : SpectrumMetaDataLookup
• MDF_PRECURSORRT : SpectrumMetaDataLookup
• MDF_RT : SpectrumMetaDataLookup
• MDF_SCANNUMBER : SpectrumMetaDataLookup
• mean() : BasicStatistics< RealT > , SummaryStatistics< T > , SignalToNoiseEstimator< Container >::GaussianEstimate , mean_and_stddev
• mean_ : IsotopeModel , BasicStatistics< RealT >
• mean_and_stddev() : mean_and_stddev
• mean_error : HyperScore::PSMDetail , SimpleSearchEngineAlgorithm::AnnotatedHit_
• mean_residuals_ : LinearRegression
• meanIntensity_() : MSstatsFile , TriqlerFile
• Measure : IDMapper
• measure_ : IDMapper
• MEASURE_DA : IDMapper
• MEASURE_PPM : IDMapper
• measurement_start_ : Plot2DCanvas , PlotCanvas
• measurement_start_point_px_ : Plot1DCanvas
• median() : CalibrationData , SummaryStatistics< T >
• mem_after : SysInfo::MemUsage
• mem_after_peak : SysInfo::MemUsage
• mem_before : SysInfo::MemUsage
• mem_before_peak : SysInfo::MemUsage
• MEMBRANE : IonSource
• MEMBRANESEPARATOR : IonSource
• MemUsage() : SysInfo::MemUsage
• menu_ : TOPPViewBase
• menu_items_ : TOPPViewMenu
• merge() : IdentificationData , IdentifiedSequence< SeqType > , InputFile , Observation , ObservationMatch , ParentSequence , ScoredProcessingResult , IsotopeDistribution , Param , QcMLFile
• merge_spectra_ : MetaboliteSpectralMatching
• mergeable() : ProteinIdentification::SearchParameters
• mergeAllIDRuns() : ConsensusMapMergerAlgorithm
• mergeAlongTime() : FIAMSDataProcessor
• mergeAnnotatedSpectra() : OPXLSpectrumProcessingAlgorithms
• MergeBlocks : SpectraMerger
• mergeFailed() : TOPPASMergerVertex
• mergeFeatures() : TargetedSpectraExtractor
• mergeIntoLayer() : Plot2DCanvas
• mergeMULTISEPeptideIds() : PercolatorFeatureSetHelper
• mergeMULTISEProteinIds() : PercolatorFeatureSetHelper
• mergePeaks() : MSChromatogram
• mergeProteinIDRuns() : ConsensusMapMergerAlgorithm
• mergeProteinsAcrossFractionsAndReplicates() : ConsensusMapMergerAlgorithm
• mergeScoredProcessingResults_() : IdentificationData
• mergeSpectra_() : SpectraMerger
• mergeSpectraBlockWise() : SpectraMerger
• mergeSpectraPrecursors() : SpectraMerger
• mergeVeto_() : GridBasedClustering< Metric >
• MESI : IonSource
• message_label_ : TOPPASBase , TOPPViewBase
• message_level : LPWrapper::SolverParam
• MessagePasserFactory() : MessagePasserFactory< Label >
• messageReady() : TOPPASScene
• meta : MzMLHandlerHelper::BinaryData
• meta_ : MetaInfoInterface
• META_DATA : DataFilters
• meta_data_ : MzTab::CMMzTabStream , MzTab::IDMzTabStream , MzTab
• meta_id_descs_ : MzDataHandler
• meta_indices_ : DataFilters
• meta_ms_experiment_ : CachedmzML , OnDiscMSExperiment
• meta_name : DataFilters::DataFilter
• meta_value_qc : MRMFeatureQC::ComponentGroupQCs , MRMFeatureQC::ComponentQCs
• MetaboliteFeatureDeconvolution() : MetaboliteFeatureDeconvolution
• MetaboliteSpectralMatching() : MetaboliteSpectralMatching
• metabuttons_ : MetaInfoVisualizer
• metadata_ : SpectrumMetaDataLookup
• metadata_only_ : FeatureFileOptions , PeakFileOptions
• MetaDataBrowser() : MetaDataBrowser
• metadataFileDialog() : TOPPViewBase
• MetaDataFlags : SpectrumMetaDataLookup
• MetaInfo() : MetaInfo
• MetaInfoDescription() : MetaInfoDescription
• metainfodescription_name_ : MetaInfoDescriptionVisualizer
• MetaInfoDescriptionVisualizer() : MetaInfoDescriptionVisualizer
• MetaInfoInterface() : MetaInfoInterface
• MetaInfoInterfaceUtils() : MetaInfoInterfaceUtils
• metainfoptr_ : MetaInfoVisualizer
• MetaInfoRegistry() : MetaInfoRegistry
• MetaInfoVisualizer() : MetaInfoVisualizer
• metalabels_ : MetaInfoVisualizer
• metaPasses_() : DataFilters
• metaRegistry() : MetaInfoInterface
• metavalue_key_ : HasMetaValue< MetaContainer >
• metaValueExists() : MetaInfoInterface
• methionine_cleavage_ : IDFilter::DigestionFilter
• method_ : Normalizer , PeakPickerChromatogram
• method_of_combination_ : AcquisitionInfo
• methods_ : HasActivationMethod< SpectrumType >
• metric_ : GridBasedClustering< Metric >
• MGF : FileTypes
• mi_contrast_matrix_ : MRMScoring
• mi_matrix_ : MRMScoring
• mi_precursor_combined_matrix_ : MRMScoring
• mi_precursor_contrast_matrix_ : MRMScoring
• mi_precursor_matrix_ : MRMScoring
• mi_score : OpenSwath_Scores
• MIC : MorpheusScore::Result
• MICROCHANNELPLATEDETECTOR : IonDetector
• MIN : LPWrapper
• min : SummaryStatistics< T >
• min_ : AxisWidget , BiGaussModel , DBoundingBox< D > , DRange< D > , EmgModel , GaussModel , InIntensityRange< PeakType > , InMzRange< PeakType > , InRTRange< SpectrumType > , DIntervalBase< D > , Histogram< ValueType, BinSizeType > , RangeBase , RangeStats< VALUE_TYPE >
• min_abs_charge_ : FLASHDeconvAlgorithm , PeakGroup
• min_charge : FLASHDeconvHelperStructs::MassFeature
• min_charge_ : Tagger
• min_cleavages_ : IDFilter::PeptideDigestionFilter
• min_correlation_coefficient_ : AbsoluteQuantitation
• min_element_ : DistanceMatrix< Value >
• min_energy_ : IsInCollisionEnergyRange< SpectrumType >
• min_float : Param::ParamEntry , ParameterInformation
• min_fragment_mz_ : TargetedSpectraExtractor
• min_fwhm_ : ElutionPeakDetection
• min_gap_ : Tagger
• min_int : Param::ParamEntry , ParameterInformation
• min_iso_size_ : FLASHDeconvAlgorithm
• min_isotope_cosine_ : FLASHDeconvAlgorithm , MassFeatureTrace
• min_isotope_fit_ : FeatureFinderAlgorithmPicked
• min_length : DBSearchParam
• min_mass_ : FLASHDeconvAlgorithm , FLASHDeconvHelperStructs::PrecalculatedAveragine
• min_match_score_ : TargetedSpectraExtractor
• MIN_MZ_ : BinnedSpectrum
• min_mz_ : FLASHDeconvAlgorithm
• min_negative_isotope_index_ : PeakGroup
• min_nr_diffs_per_bin_ : QTClusterFinder
• min_peak_width_ : FeatureFinderAlgorithmMetaboIdent , FeatureFinderIdentificationAlgorithm , MRMTransitionGroupPicker
• min_points_ : AbsoluteQuantitation
• min_precursor_charge_ : XQuestResultXMLHandler , OpenPepXLAlgorithm , OpenPepXLLFAlgorithm
• min_precursor_intensity_ : IsobaricChannelExtractor
• min_precursor_purity_ : IsobaricChannelExtractor
• min_prob_ : IsotopePatternGenerator
• min_qual_ : MRMTransitionGroupPicker
• min_reporter_intensity_ : IsobaricChannelExtractor
• min_required_elements_ : SignalToNoiseEstimatorMeanIterative< Container > , SignalToNoiseEstimatorMedian< Container >
• min_rt : ConfidenceScoring::RTNorm_
• min_rt_ : FLASHDeconvAlgorithm
• min_rt_span_ : FeatureFinderAlgorithmPicked
• min_run_occur_ : MapAlignmentAlgorithmIdentification
• min_sample_rate_ : MassTraceDetection
• min_score : IDDecoyProbability::Transformation_
• min_score_ : XQuestResultXMLHandler , MapAlignmentAlgorithmIdentification , QTClusterFinder , XFDRAlgorithm , XQuestResultXMLFile
• min_select_score_ : TargetedSpectraExtractor
• min_shared_ : ConsensusIDAlgorithmPEPIons
• min_size_ : NucleicAcidSearchEngine::HasInvalidLength , IsInIsolationWindowSizeRange< SpectrumType >
• min_spectra_ : FeatureFinderAlgorithmPicked
• min_support_ : ConsensusIDAlgorithm
• min_support_peak_count_ : FLASHDeconvAlgorithm
• min_tag_length_ : Tagger
• min_trace_length_ : MassTraceDetection
• min_trace_score_ : FeatureFinderAlgorithmPicked
• min_upper_edge_dist : ChromExtractParams
• minBound() : Histogram< ValueType, BinSizeType >
• MinimumDistance() : MinimumDistance
• minNegative() : DPosition< D, TCoordinateType >
• minor_version_ : MascotXMLHandler
• minPosition() : DIntervalBase< D >
• minPositive() : DPosition< D, TCoordinateType >
• minSpanIfSingular() : RangeBase , RangeManager< RangeBases >
• minValue() : Histogram< ValueType, BinSizeType >
• minX() : DIntervalBase< D >
• minY() : DIntervalBase< D >
• mip_gap : LPWrapper::SolverParam
• mirror_mode_ : Plot1DCanvas
• mirrorModeActive() : Plot1DCanvas
• missed_cleavages : DBSearchParam , ProteinIdentification::SearchParameters
• missed_cleavages_ : EnzymaticDigestion , MascotInfile , MultiplexDeltaMassesGenerator , OpenPepXLAlgorithm , OpenPepXLLFAlgorithm , ProteinIdentificationVisualizer
• missed_cleavages_mean : IdentificationSummary::Result
• MissedCleavages() : MissedCleavages
• missing_ : PeakPickerHiRes
• missing_decoy_action_ : PeptideIndexing
• MISSING_PARAMETERS : TOPPBase
• MissingDecoy : PeptideIndexing
• MissingInformation() : MissingInformation
• mixture_ : MSstatsFile::MSstatsTMTLine_
• ml1_ : AcqusHandler
• ml2_ : AcqusHandler
• ml3_ : AcqusHandler
• mm_max_ : PeptideIndexing
• MobilityPeak() : IonMobilityScoring::MobilityPeak
• MobilityPeak1D() : MobilityPeak1D
• MobilityPeak2D() : MobilityPeak2D
• Mobilogram() : Mobilogram
• MockFeature() : MockFeature
• MockMRMFeature() : MockMRMFeature
• MockSignalToNoise() : MockSignalToNoise
• MockTransitionGroup() : MockTransitionGroup
• mod_ : ModificationDefinition
• mod_def_set_ : OMSSAXMLFile , XTandemXMLFile
• mod_group_map_ : MascotGenericFile
• mod_identifier_ : MzTabModification
• mod_tol_ : PepXMLFile
• mode_ : HasScanMode< SpectrumType >
• model_ : Instrument , InstrumentVisualizer , SimpleSVM , TransformationDescription , TransformationModelLowess
• model_param_ : MapAlignmentAlgorithmTreeGuided
• model_type_ : MapAlignmentAlgorithmTreeGuided , TransformationDescription , TransformationXMLFile
• modelChanged_() : TheoreticalSpectrumGenerationDialog
• ModelDescription() : ModelDescription< D >
• ModelParameters : RansacModel< ModelT >
• MODELTYPE : MZTrafoModel
• modifiable : LayerDataBase
• Modification() : Modification
• modification : MzTabModificationMetaData
• Modification() : Peptide::Modification
• modification_ : UnimodXMLHandler , Residue
• modification_names_ : ModificationsDB
• modification_param_cvs : MzIdentMLDOMHandler::ModificationParam
• modification_parameter : MzIdentMLDOMHandler::SpectrumIdentificationProtocol
• modificationAA_ : ModificationVisualizer , TaggingVisualizer
• modificationCorrectionTerm() : PScore
• ModificationDefinition() : ModificationDefinition
• ModificationDefinitionsSet() : ModificationDefinitionsSet
• modificationmass_ : ModificationVisualizer , TaggingVisualizer
• modificationname_ : ModificationVisualizer , TaggingVisualizer
• modifications : MQExporterHelper::MQCommonOutputs , MzTabNucleicAcidSectionRow , MzTabOligonucleotideSectionRow , MzTabOSMSectionRow , MzTabPeptideSectionRow , MzTabProteinSectionRow , MzTabPSMSectionRow , MzTabSmallMoleculeSectionRow , LightCompound , Peptide
• modifications_ : UnimodXMLHandler , OMSSAXMLFile , ProteinHit , XTandemInfile
• modifications_fixed_ : SimpleSearchEngineAlgorithm
• modifications_max_variable_mods_per_peptide_ : SimpleSearchEngineAlgorithm
• modifications_per_peptide_ : InspectInfile
• modifications_variable_ : SimpleSearchEngineAlgorithm
• ModificationsDB() : ModificationsDB
• modificationspecificity_ : ModificationVisualizer , TaggingVisualizer
• modificationStatus_() : PlotCanvas
• ModificationType : MRMFeatureFinderScoring
• ModificationVisualizer() : ModificationVisualizer
• modified() : ParamEditorDelegate , LayerDataBase , ParamEditor
• modified_ : ParamEditor
• modified_peptides_ : MascotXMLHandler
• ModifiedSequenceMap : MRMAssay
• modify_strings_ : SVOutStream
• modifyStrings() : SVOutStream
• mods : Peptide
• mods_ : MascotInfile , ModificationsDB , PepNovoInfile
• mods_and_keys_ : PepNovoInfile
• mods_map_ : OMSSAXMLFile
• mods_to_num_ : OMSSAXMLFile
• mol_multiplier_ : AdductInfo
• molecular_formula : MetaboTargetedAssay , Compound
• molecule_type : DBSearchParam , ParentSequence
• MoleculeType : IdentificationData
• monitorFileChanged_() : FileWatcher
• MONO : OPXLDataStructs
• mono_mass_ : UnimodXMLHandler , ResidueModification , Ribonucleotide
• mono_mass_delta : Peptide::Modification
• mono_weight_ : Element , Residue
• MONOISOTOPIC : ProteinIdentification , XTandemInfile
• monoisotopic_mass_ : PeakGroup
• monoisotopic_mz_ : ExtendedIsotopeFitter1D , ExtendedIsotopeModel , IsotopeModel
• months : XQuestResultXMLHandler
• MorphologicalFilter() : MorphologicalFilter
• mouse_move_begin_ : Plot3DOpenGLCanvas
• mouse_move_end_ : Plot3DOpenGLCanvas
• mouseDoubleClickEvent() : EnhancedTabBar , MultiGradientSelector , Plot2DCanvas , TOPPASEdge , TOPPASInputFileListVertex , TOPPASOutputFileListVertex , TOPPASSplitterVertex , TOPPASToolVertex , TOPPASVertex
• mouseMoveEvent() : HistogramWidget , MultiGradientSelector , Plot1DCanvas , Plot2DCanvas , Plot3DOpenGLCanvas , TOPPASTreeView , TOPPASVertex
• mousePressEvent() : ColorSelector , HistogramWidget , MultiGradientSelector , Plot1DCanvas , Plot2DCanvas , Plot3DOpenGLCanvas , TOPPASTreeView , TOPPASVertex
• mouseReleaseEvent() : HistogramWidget , MultiGradientSelector , Plot1DCanvas , Plot2DCanvas , Plot3DOpenGLCanvas , TOPPASVertex
• move() : Annotation1DCaret< DataPoint > , Annotation1DDistanceItem , Annotation1DItem , Annotation1DPeakItem< DataPoint > , Annotation1DTextItem , Annotation1DVerticalLineItem
• moveMatchingItems() : IDFilter
• moveNewEdgeTo_() : TOPPASVertex
• movePepIDsAndRefProteinsToResultFaster_() : IDMergerAlgorithm
• moveSelectedItems() : TOPPASScene
• moving_annotations_ : Plot1DCanvas
• moving_splitter_ : HistogramWidget
• MOVINGBELT : IonSource
• MOVINGWIRE : IonSource
• MPI : IonSource
• MQCommonOutputs() : MQExporterHelper::MQCommonOutputs
• MQEvidence() : MQEvidence
• MQMsms() : MQMsms
• MRM : FileTypes
• mrm_features_ : MRMTransitionGroup< ChromatogramType, TransitionType >
• MRMAssay() : MRMAssay
• MRMBatchFeatureSelector() : MRMBatchFeatureSelector
• MRMDecoy() : MRMDecoy
• MRMFeature() : MRMFeature
• mrmfeature_ : MRMFeatureOpenMS
• MRMFeatureFilter() : MRMFeatureFilter
• MRMFeatureFinderScoring() : MRMFeatureFinderScoring
• MRMFeatureListType : MRMTransitionGroup< ChromatogramType, TransitionType >
• MRMFeatureOpenMS() : MRMFeatureOpenMS
• MRMFeaturePicker() : MRMFeaturePicker
• MRMFeaturePickerFile() : MRMFeaturePickerFile
• MRMFeatureQC() : MRMFeatureQC
• MRMFeatureQCFile() : MRMFeatureQCFile
• MRMFeatureSelector() : MRMFeatureSelector
• MRMFeatureSelector_test : MRMFeatureSelector , MRMFeatureSelector_test
• MRMIonSeries() : MRMIonSeries
• MRMMapping() : MRMMapping
• MRMTransitionGroup() : MRMTransitionGroup< ChromatogramType, TransitionType >
• MRMTransitionGroupPicker() : MRMTransitionGroupPicker
• MRMTransitionGroupType : MRMFeatureFinderScoring , OpenSwathWorkflow
• MS : FileTypes
• ms1 : SwathMap
• ms1_consumer_ : CachedSwathFileConsumer , MzMLSwathFileConsumer
• ms1_im_ : SwathMapMassCorrection
• ms1_isotope_correlation : OpenSwath_Scores
• ms1_isotope_overlap : OpenSwath_Scores
• ms1_map_ : FullSwathFileConsumer , MRMFeatureFinderScoring , OpenSwathWorkflowBase
• ms1_mi_combined_score : OpenSwath_Scores
• ms1_mi_contrast_score : OpenSwath_Scores
• ms1_mi_score : OpenSwath_Scores
• ms1_ppm_score : OpenSwath_Scores
• ms1_spectra_seen_ : SwathQC
• ms1_xcorr_coelution_combined_score : OpenSwath_Scores
• ms1_xcorr_coelution_contrast_score : OpenSwath_Scores
• ms1_xcorr_coelution_score : OpenSwath_Scores
• ms1_xcorr_shape_combined_score : OpenSwath_Scores
• ms1_xcorr_shape_contrast_score : OpenSwath_Scores
• ms1_xcorr_shape_score : OpenSwath_Scores
• MS1Extraction_() : OpenSwathWorkflowBase
• MS1SPECTRUM : InstrumentSettings
• MS2 : FileTypes
• ms2_included_ : Ms2SpectrumStats
• ms2_presence : Ms2SpectrumStats::ScanEvent
• MS2File() : MS2File
• Ms2IdentificationRate() : Ms2IdentificationRate
• Ms2SpectrumStats() : Ms2SpectrumStats
• ms_data_ : FeatureFinderAlgorithmMetaboIdent , FeatureFinderIdentificationAlgorithm
• ms_experiment_ : SpectrumAccessOpenMS
• ms_level : SpectrumMeta , InternalCalibration::LockMass , MzTabMSmallMoleculeEvidenceSectionRow , SpectrumMetaDataLookup::SpectrumMetaData , OSSpectrumMeta
• ms_level_ : FLASHDeconvAlgorithm , AreaIterator< ValueT, ReferenceT, PointerT, SpectrumIteratorT, PeakIteratorT >::Param , MSSpectrum
• ms_levels_ : MSExperiment , PeakFileOptions , PeakPickerHiRes
• MS_ONTOLOGY : DataValue
• ms_run : MzTabMetaData , MzTabMMetaData
• ms_run_ : MzTabSpectraRef
• ms_run_path_ : XQuestResultXMLHandler
• ms_run_ref : MzTabAssayMetaData , MzTabMAssayMetaData
• ms_runs_ : MzTab::CMMzTabStream , MzTab::IDMzTabStream
• MSChromatogram() : MSChromatogram
• MSChromatogramType : SpectrumAccessOpenMS , SpectrumAccessOpenMSInMemory , SpectrumAccessSqMass
• MSDataAggregatingConsumer() : MSDataAggregatingConsumer
• MSDataCachedConsumer() : MSDataCachedConsumer
• MSDataChainingConsumer() : MSDataChainingConsumer
• MSDataSqlConsumer() : MSDataSqlConsumer
• MSDataStoringConsumer() : MSDataStoringConsumer
• MSDataTransformingConsumer() : MSDataTransformingConsumer
• MSDataWritingConsumer() : MSDataWritingConsumer
• MSExperiment() : MSExperiment
• MSExperimentType : SpectrumAccessOpenMS , SpectrumAccessOpenMSCached , SpectrumAccessOpenMSInMemory
• msfile_section_ : ExperimentalDesign
• MSFileSection : ExperimentalDesign
• MSFileSectionEntry() : ExperimentalDesign::MSFileSectionEntry
• msgf_id_ : DigestionEnzymeProtein
• MsInspectFile() : MsInspectFile
• msLevel() : AreaIterator< ValueT, ReferenceT, PointerT, SpectrumIteratorT, PeakIteratorT >::Param
• msms_mz : MQExporterHelper::MQCommonOutputs
• MSNSPECTRUM : InstrumentSettings
• MSNumpressCoder() : MSNumpressCoder
• MSP : FileTypes
• msp_ : MSPGenericFile_friend
• MSPFile() : MSPFile
• MSPGenericFile() : MSPGenericFile
• MSPGenericFile_friend : MSPGenericFile , MSPGenericFile_friend
• MSSpectrum() : MSSpectrum
• MSSpectrumType : SpectrumAccessOpenMS , SpectrumAccessOpenMSCached , SpectrumAccessOpenMSInMemory , SpectrumAccessSqMass
• MSstatsFile() : MSstatsFile
• MSstatsLine_() : MSstatsFile::MSstatsLine_
• MSstatsTMTLine_() : MSstatsFile::MSstatsTMTLine_
• mt : FLASHDeconvHelperStructs::MassFeature
• MT_QUANT_AREA : MassTrace
• MT_QUANT_HEIGHT : MassTrace
• MT_QUANT_MEDIAN : MassTrace
• MT_QUANTMETHOD : MassTrace
• mt_snr_filtering_ : ElutionPeakDetection
• mtx_ : File::TemporaryFiles_
• multicharge_ : InspectInfile
• MULTICOLLECTOR : IonDetector
• MultiGradient() : MultiGradient
• MultiGradientSelector() : MultiGradientSelector
• multiNB() : NeighborSeq::NeighborStats
• MULTIPLE : ResidueModification
• MultiplexClustering() : MultiplexClustering
• MultiplexDeltaMasses() : MultiplexDeltaMasses
• MultiplexDeltaMassesGenerator() : MultiplexDeltaMassesGenerator
• MultiplexDistance() : MultiplexClustering::MultiplexDistance
• MultiplexFilteredMSExperiment() : MultiplexFilteredMSExperiment
• MultiplexFilteredPeak() : MultiplexFilteredPeak
• MultiplexFiltering() : MultiplexFiltering
• MultiplexFilteringCentroided() : MultiplexFilteringCentroided
• MultiplexFilteringProfile() : MultiplexFilteringProfile
• MultiplexIsotopicPeakPattern() : MultiplexIsotopicPeakPattern
• MultiplexSatelliteCentroided() : MultiplexSatelliteCentroided
• MultiplexSatelliteProfile() : MultiplexSatelliteProfile
• MultisetIterator : GridBasedClustering< Metric >
• MUST : CVMappingRule
• mw_ : HistogramDialog
• my_matrix_ : NeedlemanWunsch
• mz : ChromatogramExtractorAlgorithm::ExtractionCoordinates , FLASHDeconvHelperStructs::LogMzPeak , Observation , RNPxlFragmentAnnotationHelper::FragmentAnnotationDetail_ , InternalCalibration::LockMass , KDTreeFeatureMaps
• MZ : MobilityPeak2D , Peak2D
• mz : PeakCandidate , PeptideHit::PeakAnnotation
• MZ : QTClusterFinder
• mz : SimpleTSGXLMS::SimplePeak
• MZ : StablePairFinder
• mz_ : MascotInfile , MultiplexFilteredPeak , MultiplexSatelliteProfile , PeptideIdentification , PepXMLFile , PrecursorVisualizer , Product , TraMLProduct
• mz_32_bit_ : PeakFileOptions
• MZ_AXIS_TITLE : PlotWidget
• mz_bin_min_value_ : FLASHDeconvAlgorithm
• mz_bins_ : FLASHDeconvAlgorithm
• mz_correction_function_ : SwathMapMassCorrection
• mz_error_ppm_ : AccurateMassSearchResult
• mz_error_unit_ : MetaboliteSpectralMatching
• mz_extraction_window : ChromExtractParams
• mz_extraction_window_ : SwathMapMassCorrection
• mz_extraction_window_ppm_ : SwathMapMassCorrection
• mz_heavy_ : XQuestResultXMLHandler
• mz_idx_ : MultiplexFilteredPeak , MultiplexSatelliteCentroided
• mz_left_ : InPrecursorMZRange< SpectrumType >
• mz_light_ : XQuestResultXMLHandler
• mz_max : FeatureFinderAlgorithmMetaboIdent::MassTraceBounds , PeakPickerHiRes::PeakBoundary
• mz_max_ : PeakWidthEstimator , SpectraMerger::SpectraDistance_
• mz_min : FeatureFinderAlgorithmMetaboIdent::MassTraceBounds , PeakPickerHiRes::PeakBoundary
• mz_min_ : PeakWidthEstimator
• mz_model : Summary
• mz_ppm_ : FeatureGroupingAlgorithmKD , MapAlignmentAlgorithmKD
• mz_precursor : ChromatogramExtractorAlgorithm::ExtractionCoordinates
• mz_range_ : FeatureFileOptions , PeakFileOptions
• mz_raw_ : MzCalibration
• mz_ref_ : MzCalibration
• mz_right_ : InPrecursorMZRange< SpectrumType >
• mz_score : FeatureFinderAlgorithmPickedHelperStructs::IsotopePattern
• mz_shifts_ : MultiplexIsotopicPeakPattern
• mz_start : SignalToNoiseEstimatorMedianRapid::NoiseEstimator
• mz_stdev : Summary
• mz_tab_id : MzTabMetaData , MzTabMMetaData
• mz_tab_mode : MzTabMetaData
• mz_tab_type : MzTabMetaData
• mz_tab_version : MzTabMetaData , MzTabMMetaData
• mz_tol_ : FeatureGroupingAlgorithmKD , MapAlignmentAlgorithmKD
• mz_tolerance_ : IDMapper , MultiplexFiltering , TargetedSpectraExtractor
• mz_tolerance_unit_in_ppm_ : MultiplexFiltering
• mz_unit_is_Da_ : TargetedSpectraExtractor
• mz_window_ : FeatureFinderAlgorithmMetaboIdent , FeatureFinderIdentificationAlgorithm
• mz_window_ppm_ : FeatureFinderAlgorithmMetaboIdent , FeatureFinderIdentificationAlgorithm
• MZBegin() : MSSpectrum
• MzCalibration() : MzCalibration
• MZDATA : FileTypes
• MzDataFile() : MzDataFile
• MzDataHandler() : MzDataHandler
• MzDataValidator() : MzDataValidator
• MZEnd() : MSChromatogram , MSSpectrum
• mzid_parser_ : MzIdentMLDOMHandler
• MZIDENTML : FileTypes
• MzIdentMLDOMHandler() : MzIdentMLDOMHandler
• MzIdentMLFile() : MzIdentMLFile
• MzIdentMLHandler() : MzIdentMLHandler
• MzIdentMLValidator() : MzIdentMLValidator
• MZML : FileTypes
• MzMLFile() : MzMLFile
• MzMLHandler() : MzMLHandler
• MzMLSpectrumDecoder() : MzMLSpectrumDecoder
• MzMLSqliteHandler() : MzMLSqliteHandler
• MzMLSqliteSwathHandler() : MzMLSqliteSwathHandler
• MzMLSwathFileConsumer() : MzMLSwathFileConsumer
• MzMLValidator() : MzMLValidator
• MZQC : FileTypes
• MzQCFile() : MzQCFile
• mzs_ : FIAMSDataProcessor
• MZTAB : FileTypes
• MzTab() : MzTab
• MzTabBase() : MzTabBase
• MzTabBoolean() : MzTabBoolean
• MzTabDouble() : MzTabDouble
• MzTabDoubleList() : MzTabDoubleList
• MzTabFile() : MzTabFile
• MzTabInteger() : MzTabInteger
• MzTabIntegerList() : MzTabIntegerList
• MzTabM() : MzTabM
• MzTabMetaData() : MzTabMetaData
• MzTabMFile : MzTabFile , MzTabMFile
• MzTabMMetaData() : MzTabMMetaData
• MzTabModification() : MzTabModification
• MzTabParameter() : MzTabParameter
• MzTabParameterList() : MzTabParameterList
• MzTabProteinSectionRow() : MzTabProteinSectionRow
• MzTabSpectraRef() : MzTabSpectraRef
• MzTabString() : MzTabString
• MzTabStringList() : MzTabStringList
• MZTrafoModel() : MZTrafoModel
• MZXML : FileTypes
• MzXMLFile() : MzXMLFile
• MzXMLHandler() : MzXMLHandler