- u -

• ui : FLASHDeconvWizardBase , FLASHDeconvTabWidget , SwathTabWidget , SwathWizardBase
• ui_ : DataFilterDialog , FeatureEditDialog , InputFile , FilterableList , FilterList , InputFileList , Plot1DPrefDialog , Plot2DPrefDialog , Plot3DPrefDialog , PythonModuleRequirement , PythonSelector , TOPPViewPrefDialog , LayerStatisticsDialog , ListFilterDialog , OutputDirectory , ParamEditor , Plot1DGoToDialog , Plot2DGoToDialog , SpectrumAlignmentDialog , SwathLibraryStats , TheoreticalSpectrumGenerationDialog , TOPPASInputFileDialog , TOPPASInputFilesDialog , TOPPASIOMappingDialog , TOPPASOutputFilesDialog , TOPPASVertexNameDialog , TOPPViewOpenDialog
• uis_threshold_peak_area_ : MRMFeatureFinderScoring
• uis_threshold_sn_ : MRMFeatureFinderScoring
• ulod_ : AbsoluteQuantitationMethod
• uloq_ : AbsoluteQuantitationMethod
• umap_index2children_naive_ : ACTrie
• umap_index2needles_ : ACTrie
• unambiguous_score_ : AScore
• unassigned_contaminants_ratio : Contaminants::ContaminantsSummary
• unassigned_peptide_identifications_ : ConsensusMap , FeatureMap
• unassignedIDs_ : FeatureFinderIdentificationAlgorithm
• unassignedMS2 : FeatureMapping::FeatureToMs2Indices
• uncalibrated_calibrated_mz_mda : MQExporterHelper::MQCommonOutputs
• uncalibrated_calibrated_mz_ppm : MQExporterHelper::MQCommonOutputs
• uncalibrated_mass_error_da : MQExporterHelper::MQCommonOutputs
• uncalibrated_mass_error_ppm : MQExporterHelper::MQCommonOutputs
• undo_ : Colorizer
• undo_all_ : Colorizer
• undo_button_ : BaseVisualizerGUI
• undobutton_ : MetaDataBrowser
• undos_only : Colorizer
• unfindable_peptides : NeighborSeq::NeighborStats
• unidentified : IDMapper::SpectraIdentificationState
• unimod_ : MzIdentMLDOMHandler , MzIdentMLHandler
• unimod_id : Peptide::Modification , LightModification
• unimod_record_id_ : ResidueModification
• uniprot_id : TransitionTSVFile::TSVTransition
• unique : MzTabOligonucleotideSectionRow , MzTabPeptideSectionRow , MzTabPSMSectionRow
• unique_id : ConsensusMap::ColumnHeader
• unique_id_ : UniqueIdInterface
• unique_id_scores_ : XFDRAlgorithm
• unique_ids_ : XFDRAlgorithm
• unique_peptides : IdentificationSummary::Result
• unique_proteins : IdentificationSummary::Result
• uniqueid_to_index_ : UniqueIdIndexer< T >
• unit_ : CVTerm , DataValue , DimBase
• unit_accession : SemanticValidator::CVTerm
• unit_accession_att_ : SemanticValidator
• unit_mapper_ : PlotCanvas
• unit_multiplier : MzMLHandlerHelper::BinaryData
• unit_name : SemanticValidator::CVTerm
• unit_name_att_ : SemanticValidator
• unit_ppm_ : BinnedSpectrum
• unit_type_ : DataValue
• unitAcc : QcMLFile::Attachment , QcMLFile::QualityParameter
• unitRef : QcMLFile::Attachment , QcMLFile::QualityParameter
• units : ControlledVocabulary::CVTerm
• UNKNOWN_AA : PeptideEvidence
• UNKNOWN_LOG_LEVEL : LogStreamBuf
• UNKNOWN_NEIGHBOR : ParentMatch
• UNKNOWN_POSITION : ParentMatch , PeptideEvidence
• unmatched_action_ : PeptideIndexing
• unmodified_seq : OPXLDataStructs::AASeqWithMass
• unparsed : ControlledVocabulary::CVTerm
• UnspecificCleavage : EnzymaticDigestion
• update_buffer_ : PlotCanvas
• upper : SwathMap
• upper_ : LinearRegression
• upperq : SummaryStatistics< T >
• uri : MzTabMDatabaseMetaData , MzTabMetaData , MzTabMMetaData , MzTabMSmallMoleculeEvidenceSectionRow , MzTabMSmallMoleculeSectionRow , MzTabNucleicAcidSectionRow , MzTabOligonucleotideSectionRow , MzTabOSMSectionRow , MzTabPeptideSectionRow , MzTabProteinSectionRow , MzTabPSMSectionRow , MzTabSmallMoleculeSectionRow
• URI : CV
• url : MzTabCVMetaData
• url_ : ContactPerson , ContactPersonVisualizer , ControlledVocabulary , NetworkGetRequest , TOPPASResource
• use_adducts_ : MapAlignmentAlgorithmIdentification
• use_chauvenet_ : AbsoluteQuantitation
• use_coelution_score_ : OpenSwath_Scores_Usage
• use_consensus_ : MRMTransitionGroupPicker
• use_dia_scores_ : OpenSwath_Scores_Usage
• use_elution_model_score_ : OpenSwath_Scores_Usage
• use_external_boundaries_ : FullSwathFileConsumer
• use_feature_rt_ : MapAlignmentAlgorithmIdentification
• use_gauss_ : PeakPickerChromatogram , TargetedSpectraExtractor
• use_IDs_ : QTCluster , QTClusterFinder , StablePairFinder
• use_im_scores : OpenSwath_Scores_Usage
• use_intensity_score_ : OpenSwath_Scores_Usage
• use_ionseries_scores : OpenSwath_Scores_Usage
• use_library_score_ : OpenSwath_Scores_Usage
• use_lossy_compression_ : MzMLSqliteHandler
• use_lossy_numpress : SqMassFile::SqMassConfig
• use_mi_score_ : OpenSwath_Scores_Usage
• use_ms1_correlation : OpenSwath_Scores_Usage
• use_ms1_fullscan : OpenSwath_Scores_Usage
• use_ms1_ion_mobility_ : MRMFeatureFinderScoring , OpenSwathScoring , OpenSwathWorkflowBase
• use_ms1_mi : OpenSwath_Scores_Usage
• use_ms1_traces_ : OpenSwathTSVWriter , OpenSwathWorkflowBase
• use_ms2_isotope_scores : OpenSwath_Scores_Usage
• use_mz_scoring_by_element_range_ : FeatureFindingMetabo
• use_mz_scoring_C13_ : FeatureFindingMetabo
• use_nr_peaks_score_ : OpenSwath_Scores_Usage
• use_peak_shape_metrics : OpenSwath_Scores_Usage
• use_ppm_ : CalibrationData , MZTrafoModel
• use_ppm_tolerance_ : GaussFilterAlgorithm
• use_precursor_data_ : PepXMLFile
• use_precursors_ : MRMTransitionGroupPicker
• use_prefix_ : FuzzyStringComparator
• use_psm_cutoff_ : FeatureFinderIdentificationAlgorithm
• use_rt_score_ : OpenSwath_Scores_Usage
• use_sequence_tags_ : OpenPepXLLFAlgorithm
• use_shape_score_ : OpenSwath_Scores_Usage
• use_smoothed_intensities_ : FeatureFindingMetabo
• use_sn_score_ : OpenSwath_Scores_Usage
• use_sonar_scores : OpenSwath_Scores_Usage
• use_ssl_ : MascotRemoteQuery
• use_term_ : CVMappingTerm
• use_term_name_ : CVMappingTerm
• use_total_mi_score_ : OpenSwath_Scores_Usage
• use_total_prob_ : FineIsotopePatternGenerator
• use_total_xic_score_ : OpenSwath_Scores_Usage
• use_uis_scores : OpenSwath_Scores_Usage
• user_specified_out_dir_ : TOPPASScene
• user_ticks : StopWatch::TimeDiff_