OpenMS::TargetedExperimentHelper Namespace Reference

This class stores helper structures that are used in multiple classes of the TargetedExperiment (e.g. ReactionMonitoringTransition and IncludeExcludeTarget). More...

Classes
struct	Configuration
struct	CV
struct	Protein
class	RetentionTime
	This class stores a retention time structure that is used in TargetedExperiment (representing a TraML file) More...
class	PeptideCompound
	Base class to represent either a peptide or a compound. More...
class	Compound
	Represents a compound (small molecule) More...
class	Peptide
	Represents a peptide (amino acid sequence) More...
struct	Contact
struct	Publication
struct	Instrument
struct	Prediction
struct	Interpretation
	Product ion interpretation. More...
struct	TraMLProduct
	Represents a product ion. More...

Functions
OpenMS::AASequence	getAASequence (const Peptide &peptide)
	helper function that converts a Peptide object to a AASequence object More...
void	setModification (int location, int max_size, const String &modification, OpenMS::AASequence &aas)
	helper function that sets a modification on a AASequence object More...

Detailed Description

This class stores helper structures that are used in multiple classes of the TargetedExperiment (e.g. ReactionMonitoringTransition and IncludeExcludeTarget).

Function Documentation

getAASequence()

OpenMS::AASequence OpenMS::TargetedExperimentHelper::getAASequence

(

const Peptide &

peptide

)

helper function that converts a Peptide object to a AASequence object

setModification()

void OpenMS::TargetedExperimentHelper::setModification	(	int	location,
		int	max_size,
		const String &	modification,
		OpenMS::AASequence &	aas
	)

helper function that sets a modification on a AASequence object