ProgressLogger Class Reference

Base class for all classes that want to report their progress. More...

#include <OpenMS/CONCEPT/ProgressLogger.h>

Inherited by SignalToNoiseEstimator< MSSpectrum >, AccurateMassSearchEngine, AverageLinkage, BaseGroupFinder, BaseSuperimposer, BasicProteinInferenceAlgorithm, BayesianProteinInferenceAlgorithm, ChromatogramExtractor, ChromatogramExtractorAlgorithm, CompleteLinkage, ConfidenceScoring, ConsensusMapMergerAlgorithm, ConsensusXMLFile, DTA2DFile, ElutionPeakDetection, FASTAFile, FeatureFinderAlgorithm, FeatureFinderAlgorithmPicked, FeatureFinderMultiplexAlgorithm, FeatureFindingMetabo, FeatureGroupingAlgorithmKD, FeatureXMLFile, GNPSMGFFile, GaussFilter, GridBasedClustering< Metric >, IDMergerAlgorithm, IdXMLFile, CachedMzMLHandler, ConsensusXMLHandler, FeatureXMLHandler, OMSFileLoad, OMSFileStore, InternalCalibration, LinearResampler, MRMAssay, MRMDecoy, MRMFeatureFinderScoring, MRMFeatureQCFile, MS2File, MapAlignmentAlgorithmIdentification, MapAlignmentAlgorithmPoseClustering, MapAlignmentAlgorithmTreeGuided, MascotGenericFile, MascotInfile, MassTraceDetection, MasstraceCorrelator, MetaboliteSpectralMatching, MorphologicalFilter, MultiplexClustering, MultiplexFiltering, MzDataFile, MzIdentMLFile, MzMLFile, MzXMLFile, OMSFile, OpenPepXLAlgorithm, OpenPepXLLFAlgorithm, OpenSwathWorkflowBase, PeakPickerHiRes, PeakPickerIterative, PeptideIndexing, QcMLFile, SavitzkyGolayFilter, SignalToNoiseEstimator< Container >, SimpleSearchEngineAlgorithm, SingleLinkage, SpectraMerger, SwathFile, ToolDescriptionFile, TraMLFile, TransitionTSVFile, XFDRAlgorithm, XMassFile, and XQuestResultXMLFile.

Collaboration diagram for ProgressLogger:

Classes
class	ProgressLoggerImpl
	This class represents an actual implementation of a logger. More...

Public Types
enum	LogType { CMD , GUI , NONE }
	Possible log types. More...

Public Member Functions
	ProgressLogger ()
	Constructor. More...
virtual	~ProgressLogger ()
	Destructor. More...
	ProgressLogger (const ProgressLogger &other)
	Copy constructor. More...
ProgressLogger &	operator= (const ProgressLogger &other)
	Assignment Operator. More...
void	setLogType (LogType type) const
	Sets the progress log that should be used. The default type is NONE! More...
LogType	getLogType () const
	Returns the type of progress log being used. More...
void	setLogger (ProgressLoggerImpl *logger)
	Sets the logger to be used for progress logging. More...
void	startProgress (SignedSize begin, SignedSize end, const String &label) const
	Initializes the progress display. More...
void	setProgress (SignedSize value) const
	Sets the current progress. More...
void	endProgress (UInt64 bytes_processed=0) const
void	nextProgress () const
	increment progress by 1 (according to range begin-end) More...

Protected Attributes
LogType	type_
time_t	last_invoke_
ProgressLoggerImpl *	current_logger_

Static Protected Attributes
static int	recursion_depth_

Detailed Description

Base class for all classes that want to report their progress.

Per default the progress log is disabled. Use setLogType to enable it.

Use startProgress, setProgress and endProgress for the actual logging.

Note

All methods are const, so it can be used through a const reference or in const methods as well!

Member Enumeration Documentation

LogType

enum LogType

Possible log types.

Enumerator
CMD	Command line progress.
GUI	Progress dialog.
NONE	No progress logging.

Constructor & Destructor Documentation

ProgressLogger() [1/2]

ProgressLogger

(

)

Constructor.

~ProgressLogger()

virtual ~ProgressLogger ( )

virtual

Destructor.

ProgressLogger() [2/2]

ProgressLogger

(

const ProgressLogger &

other

)

Copy constructor.

Member Function Documentation

endProgress()

void endProgress

(

UInt64

bytes_processed = 0

)

const

Ends the progress display You may optionally pass the number of bytes read/written to get a MB/sec estimate (if -1 or 0, it will be ignored)

Referenced by SpectraMerger::averageCentroidSpectra_(), GridBasedClustering< Metric >::cluster(), SignalToNoiseEstimatorMeanIterative< Container >::computeSTN_(), SignalToNoiseEstimatorMedian< Container >::computeSTN_(), TOPPOpenSwathBase::loadTransitionList(), TOPPFLASHDeconv::main_(), and NucleicAcidSearchEngine::main_().

getLogType()

LogType getLogType

(

)

const

Returns the type of progress log being used.

nextProgress()

void nextProgress

(

)

const

increment progress by 1 (according to range begin-end)

Referenced by TOPPFLASHDeconv::main_().

operator=()

ProgressLogger& operator=

(

const ProgressLogger &

other

)

Assignment Operator.

Referenced by SignalToNoiseEstimator< Container >::operator=().

setLogger()

void setLogger

(

ProgressLoggerImpl *

logger

)

Sets the logger to be used for progress logging.

Parameters

logger

setLogType()

void setLogType

(

LogType

type

)

const

Sets the progress log that should be used. The default type is NONE!

Referenced by TOPPOpenSwathBase::loadSwathFiles_(), TOPPOpenSwathBase::loadTransitionList(), TOPPFLASHDeconv::main_(), TOPPGNPSExport::main_(), NucleicAcidSearchEngine::main_(), and TOPPOpenSwathBase::performCalibration().

setProgress()

void setProgress

(

SignedSize

value

)

const

Sets the current progress.

Referenced by SpectraMerger::averageCentroidSpectra_(), GridBasedClustering< Metric >::cluster(), SignalToNoiseEstimatorMeanIterative< Container >::computeSTN_(), SignalToNoiseEstimatorMedian< Container >::computeSTN_(), and NucleicAcidSearchEngine::main_().

startProgress()

void startProgress	(	SignedSize	begin,
		SignedSize	end,
		const String &	label
	)		const

Initializes the progress display.

Sets the progress range from begin to end. If begin equals end, setProgress only indicates that the program is still running, but without showing any absolute progress value.

Sets the label to label.

Note

Make sure to call setLogType first!

Referenced by SpectraMerger::averageCentroidSpectra_(), GridBasedClustering< Metric >::cluster(), SignalToNoiseEstimatorMeanIterative< Container >::computeSTN_(), SignalToNoiseEstimatorMedian< Container >::computeSTN_(), TOPPOpenSwathBase::loadTransitionList(), TOPPFLASHDeconv::main_(), and NucleicAcidSearchEngine::main_().

Member Data Documentation

current_logger_

ProgressLoggerImpl* current_logger_

mutableprotected

last_invoke_

time_t last_invoke_

mutableprotected

recursion_depth_

int recursion_depth_

staticprotected

type_

LogType type_

mutableprotected