OpenMS
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Visitor which can save a full ConsensusMap; subsequently the data can be stored to a file. More...
#include <OpenMS/VISUAL/VISITORS/LayerStoreData.h>
Public Member Functions | |
LayerStoreDataConsensusMapAll () | |
void | saveToFile (const String &filename, const ProgressLogger::LogType lt) const override |
void | storeFullCM (const ConsensusMap &cm) |
Public Member Functions inherited from LayerStoreData | |
LayerStoreData (FileTypeList supported_storage_formats) | |
virtual | ~LayerStoreData ()=default |
virtual D'tor for proper cleanup of derived classes' members More... | |
FileTypeList | getSupportedFileFormats () const |
Which formats are supported when writing the file? More... | |
Private Attributes | |
const ConsensusMap * | full_cm_ = nullptr |
pointer to the full data, when storeFullExperiment() was called More... | |
Additional Inherited Members | |
Protected Member Functions inherited from LayerStoreData | |
FileTypes::Type | getSupportedExtension_ (const String &filename) const |
extracts the supported extension (converting UNKNOWN to first item in storage_formats_) or throws an Exception::UnableToCreateFile More... | |
Protected Attributes inherited from LayerStoreData | |
FileTypeList | storage_formats_ |
file formats which can hold the data from the layer; The first item should be the preferred/default format More... | |
Visitor which can save a full ConsensusMap; subsequently the data can be stored to a file.
Since only a pointer is stored internally, make sure the lifetime of the ConsensusMap exceeds this visitor.
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inline |
References FileTypes::CONSENSUSXML.
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overridevirtual |
Save the internal data to a file. The filename's
suffix determines the file format. It must be one of getSupportedFileFormats() or UNKNOWN. If the filename's
suffix is unknown, the first item from getSupportedFileFormats() determines the storage format.
filename | A relative or absolute path+filename. Its suffix determines the format. |
lt | Show a progress bar in the GUI? |
Exception::UnableToCreateFile | if the extension of filename is neither in getSupportedFileFormats() nor UNKNOWN. |
Implements LayerStoreData.
void storeFullCM | ( | const ConsensusMap & | cm | ) |
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private |
pointer to the full data, when storeFullExperiment() was called