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using | PeakType = Mobilogram::PeakType |
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using | RangeAllType = RangeManager< RangeRT, RangeMZ, RangeIntensity, RangeMobility > |
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enum | DataType {
DT_PEAK
, DT_CHROMATOGRAM
, DT_FEATURE
, DT_CONSENSUS
,
DT_IDENT
, DT_UNKNOWN
} |
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enum | Flags {
F_HULL
, F_HULLS
, F_UNASSIGNED
, P_PRECURSORS
,
P_PROJECTIONS
, C_ELEMENTS
, I_PEPTIDEMZ
, I_LABELS
,
SIZE_OF_FLAGS
} |
| Flags that determine which information is shown. More...
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enum | LabelType {
L_NONE
, L_INDEX
, L_META_LABEL
, L_ID
,
L_ID_ALL
, SIZE_OF_LABEL_TYPE
} |
| Label used in visualization. More...
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typedef FeatureMap | FeatureMapType |
| Features. More...
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typedef boost::shared_ptr< FeatureMap > | FeatureMapSharedPtrType |
| SharedPtr on feature map. More...
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typedef ConsensusMap | ConsensusMapType |
| consensus features More...
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typedef boost::shared_ptr< ConsensusMap > | ConsensusMapSharedPtrType |
| SharedPtr on consensus features. More...
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typedef PeakMap | ExperimentType |
| Main data type (experiment) More...
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typedef boost::shared_ptr< ExperimentType > | ExperimentSharedPtrType |
| SharedPtr on MSExperiment. More...
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typedef boost::shared_ptr< const ExperimentType > | ConstExperimentSharedPtrType |
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typedef boost::shared_ptr< OnDiscMSExperiment > | ODExperimentSharedPtrType |
| SharedPtr on On-Disc MSExperiment. More...
|
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typedef boost::shared_ptr< OSWData > | OSWDataSharedPtrType |
| SharedPtr on OSWData. More...
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|
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| LayerDataIonMobility () |
| Default constructor. More...
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| LayerDataIonMobility (const LayerDataIonMobility &ld) |
| Copy-ctor. More...
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LayerDataIonMobility & | operator= (const LayerDataIonMobility &ld)=delete |
| no assignment operator (should not be needed) More...
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std::unique_ptr< Painter2DBase > | getPainter2D () const override |
| Obtain a painter which can draw the layer on a 2D canvas. More...
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std::unique_ptr< LayerData1DBase > | to1DLayer () const override |
| Create a shallow copy (i.e. shared experimental data using shared_ptr) of the current layer, and make it 1D (i.e. support showing a single spec/chrom etc) More...
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std::unique_ptr< LayerStoreData > | storeVisibleData (const RangeAllType &visible_range, const DataFilters &layer_filters) const override |
| Returns a visitor which contains the current visible data and can write the data to disk. More...
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std::unique_ptr< LayerStoreData > | storeFullData () const override |
| Returns a visitor which contains the the full data of the layer and can write the data to disk in the appropriate format (e.g. mzML) More...
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ProjectionData | getProjection (const DIM_UNIT unit_x, const DIM_UNIT unit_y, const RangeAllType &area) const override |
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PeakIndex | findHighestDataPoint (const RangeAllType &) const override |
| Find the datapoint with the highest intensity within the given range and return a proxy to that datapoint. More...
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void | updateRanges () override |
| Update ranges of the underlying data. More...
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RangeAllType | getRange () const override |
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void | setMobilityData (const Mobilogram &mobilogram) |
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const Mobilogram & | getMobilogram (Size index) const |
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PointXYType | peakIndexToXY (const PeakIndex &peak, const DimMapper< 2 > &mapper) const override |
| Convert a PeakIndex to a XY coordinate (via mapper ). More...
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String | getDataArrayDescription (const PeakIndex &peak_index) override |
| Get name and value of all data-arrays corresponding to the given datapoint. More...
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std::unique_ptr< LayerStatistics > | getStats () const override |
| Compute layer statistics (via visitor) More...
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| LayerDataBase ()=delete |
| Default constructor (for virtual inheritance) More...
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| LayerDataBase (const DataType type) |
| C'tor for child classes. More...
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| LayerDataBase (const LayerDataBase &ld)=default |
| Copy-C'tor. More...
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LayerDataBase & | operator= (const LayerDataBase &ld)=delete |
| Assignment operator. More...
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|
| LayerDataBase (LayerDataBase &&ld)=delete |
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LayerDataBase & | operator= (LayerDataBase &&ld)=delete |
| Move assignment – deleted, by same argument as for move c'tor. More...
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virtual | ~LayerDataBase ()=default |
| D'tor. More...
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virtual PeakIndex | findClosestDataPoint (const RangeAllType &area) const |
| Find the closest datapoint within the given range and return a proxy to that datapoint. More...
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virtual bool | annotate (const std::vector< PeptideIdentification > &identifications, const std::vector< ProteinIdentification > &protein_identifications) |
|
float | getMinIntensity () const |
| Returns the minimum intensity of the internal data, depending on type. More...
|
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float | getMaxIntensity () const |
| Returns the maximum intensity of the internal data, depending on type. More...
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const String & | getName () const |
| The name of the layer, usually the basename of the file. More...
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void | setName (const String &new_name) |
| Set the name of the layer, usually the basename of the file. More...
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const String & | getNameSuffix () const |
| get the extra annotation to the layers name, e.g. '[39]' for which chromatogram index is currently shown in 1D More...
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void | setNameSuffix (const String &decorator) |
| set an extra annotation as suffix to the layers name, e.g. '[39]' for which chromatogram index is currently shown in 1D More...
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virtual String | getDecoratedName () const |
| get name augmented with attributes, e.g. '*' if modified More...
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|
Class that stores the data for one layer of type IonMobility.
FIXME: currently we only store a single mobilogram, since this is what is required to show a projection in 2D View. If there is another application, feel free to implement a surrounding container (don't use vector<Mobilogram>, do it properly! :)).