PeakIndex Struct Reference

Index of a peak or feature. More...

#include <OpenMS/KERNEL/PeakIndex.h>

Collaboration diagram for PeakIndex:

Public Member Functions
	PeakIndex ()
	Default constructor. Creates an invalid peak reference. More...
	PeakIndex (Size lpeak)
	Constructor that sets the peak index (for feature maps) More...
	PeakIndex (Size lspectrum, Size lpeak)
	Constructor that sets the peak and spectrum index (for peak maps) More...
bool	isValid () const
	returns if the current peak ref is valid More...
void	clear ()
	Invalidates the current index. More...
template<typename FeatureMapType >
const FeatureMapType::value_type &	getFeature (const FeatureMapType &map) const
	Access to the feature (or consensus feature) corresponding to this index. More...
template<typename PeakMapType >
const PeakMapType::PeakType &	getPeak (const PeakMapType &map) const
	Access to a peak corresponding to this index. More...
template<typename PeakMapType >
const PeakMapType::SpectrumType &	getSpectrum (const PeakMapType &map) const
	Access to a spectrum corresponding to this index. More...
bool	operator== (const PeakIndex &rhs) const
	Equality operator. More...
bool	operator!= (const PeakIndex &rhs) const
	Inequality operator. More...

Public Attributes
Size	peak
	Peak or feature index. More...
Size	spectrum
	Spectrum index. More...

Detailed Description

Index of a peak or feature.

This struct can be used to store both peak or feature indices.

Constructor & Destructor Documentation

PeakIndex() [1/3]

PeakIndex ( )

inline

Default constructor. Creates an invalid peak reference.

PeakIndex() [2/3]

PeakIndex ( Size  lpeak )

inlineexplicit

Constructor that sets the peak index (for feature maps)

PeakIndex() [3/3]

PeakIndex ( Size  lspectrum, Size  lpeak  )

inline

Constructor that sets the peak and spectrum index (for peak maps)

Member Function Documentation

clear()

void clear ( )

inline

Invalidates the current index.

References PeakIndex::peak, and PeakIndex::spectrum.

getFeature()

const FeatureMapType::value_type& getFeature ( const FeatureMapType &  map ) const

inline

Access to the feature (or consensus feature) corresponding to this index.

This method is intended for arrays of features e.g. FeatureMap

The main advantage of using this method instead accessing the data directly is that range check performed in debug mode.

Exceptions

Exception::Precondition

is thrown if this index is invalid for the map (only in debug mode)

References OPENMS_PRECONDITION, and PeakIndex::peak.

getPeak()

const PeakMapType::PeakType& getPeak ( const PeakMapType &  map ) const

inline

Access to a peak corresponding to this index.

This method is intended for arrays of DSpectra e.g. MSExperiment

The main advantage of using this method instead accessing the data directly is that range check performed in debug mode.

Exceptions

Exception::Precondition

is thrown if this index is invalid for the map (only in debug mode)

References OPENMS_PRECONDITION, PeakIndex::peak, and PeakIndex::spectrum.

getSpectrum()

const PeakMapType::SpectrumType& getSpectrum ( const PeakMapType &  map ) const

inline

Access to a spectrum corresponding to this index.

This method is intended for arrays of DSpectra e.g. MSExperiment.

The main advantage of using this method instead accessing the data directly is that range check performed in debug mode.

Exceptions

Exception::Precondition

is thrown if this index is invalid for the map (only in debug mode)

References OPENMS_PRECONDITION, and PeakIndex::spectrum.

isValid()

bool isValid ( ) const

inline

returns if the current peak ref is valid

References PeakIndex::peak.

operator!=()

bool operator!= ( const PeakIndex &  rhs ) const

inline

Inequality operator.

References PeakIndex::peak, and PeakIndex::spectrum.

operator==()

bool operator== ( const PeakIndex &  rhs ) const

inline

Equality operator.

References PeakIndex::peak, and PeakIndex::spectrum.

Member Data Documentation

peak

Size peak

Peak or feature index.

Referenced by PeakIndex::clear(), PeakIndex::getFeature(), PeakIndex::getPeak(), PeakIndex::isValid(), PeakIndex::operator!=(), and PeakIndex::operator==().

spectrum

Size spectrum

Spectrum index.

Referenced by PeakIndex::clear(), PeakIndex::getPeak(), PeakIndex::getSpectrum(), PeakIndex::operator!=(), and PeakIndex::operator==().