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OpenMS
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Information about software used for data processing. More...
#include <OpenMS/METADATA/ID/ProcessingSoftware.h>
Public Member Functions | |
| ProcessingSoftware (const String &name="", const String &version="", const std::vector< ScoreTypeRef > &assigned_scores=std::vector< ScoreTypeRef >()) | |
 Public Member Functions inherited from Software | |
| Software (const String &name="", const String &version="") | |
| Constructor. More... | |
| Software (const Software &)=default | |
| Copy constructor. More... | |
| Software (Software &&)=default | |
| Move constructor. More... | |
| ~Software () override | |
| Destructor. More... | |
| Software & | operator= (const Software &)=default |
| Assignment operator. More... | |
| Software & | operator= (Software &&) &=default |
| Move assignment operator. More... | |
| bool | operator== (const Software &rhs) const |
| Equality operator. More... | |
| bool | operator!= (const Software &rhs) const |
| Inequality operator. More... | |
| bool | operator< (const Software &rhs) const |
| Less-than operator (for sorting) More... | |
| const String & | getName () const |
| Returns the name of the software. More... | |
| void | setName (const String &name) |
| Sets the name of the software. More... | |
| const String & | getVersion () const |
| Returns the software version. More... | |
| void | setVersion (const String &version) |
| Sets the software version. More... | |
| Public Member Functions inherited from CVTermList | |
| CVTermList ()=default | |
| Defaults constructor. More... | |
| CVTermList (const CVTermList &)=default | |
| Copy constructor. More... | |
| CVTermList (CVTermList &&) noexcept | |
| Move constructor. More... | |
| virtual | ~CVTermList () |
| Destructor. More... | |
| CVTermList & | operator= (const CVTermList &rhs) &=default |
| Assignment operator. More... | |
| CVTermList & | operator= (CVTermList &&) &=default |
| Move assignment operator. More... | |
| void | setCVTerms (const std::vector< CVTerm > &terms) |
| sets the CV terms More... | |
| void | replaceCVTerm (const CVTerm &cv_term) |
| replaces the specified CV term More... | |
| void | replaceCVTerms (const std::vector< CVTerm > &cv_terms, const String &accession) |
| replaces the specified CV terms using the given accession number More... | |
| void | replaceCVTerms (const std::map< String, std::vector< CVTerm > > &cv_term_map) |
| replaces all cv terms with a map (can be obtained via getCVTerms) More... | |
| void | consumeCVTerms (const std::map< String, std::vector< CVTerm > > &cv_term_map) |
| merges the given map into the member map, no duplicate checking More... | |
| const std::map< String, std::vector< CVTerm > > & | getCVTerms () const |
| returns the accession string of the term More... | |
| void | addCVTerm (const CVTerm &term) |
| adds a CV term More... | |
| bool | operator== (const CVTermList &cv_term_list) const |
| equality operator More... | |
| bool | operator!= (const CVTermList &cv_term_list) const |
| inequality operator More... | |
| bool | hasCVTerm (const String &accession) const |
| checks whether the term has a value More... | |
| bool | empty () const |
| return true if no terms are available More... | |
| Public Member Functions inherited from MetaInfoInterface | |
| MetaInfoInterface () | |
| Constructor. More... | |
| MetaInfoInterface (const MetaInfoInterface &rhs) | |
| Copy constructor. More... | |
| MetaInfoInterface (MetaInfoInterface &&) noexcept | |
| Move constructor. More... | |
| ~MetaInfoInterface () | |
| Destructor. More... | |
| MetaInfoInterface & | operator= (const MetaInfoInterface &rhs) |
| Assignment operator. More... | |
| MetaInfoInterface & | operator= (MetaInfoInterface &&) noexcept |
| Move assignment operator. More... | |
| void | swap (MetaInfoInterface &rhs) |
| Swap contents. More... | |
| bool | operator== (const MetaInfoInterface &rhs) const |
| Equality operator. More... | |
| bool | operator!= (const MetaInfoInterface &rhs) const |
| Equality operator. More... | |
| const DataValue & | getMetaValue (const String &name) const |
| Returns the value corresponding to a string, or DataValue::EMPTY if not found. More... | |
| DataValue | getMetaValue (const String &name, const DataValue &default_value) const |
| Returns the value corresponding to a string, or a default value (e.g.: DataValue::EMPTY) if not found More... | |
| const DataValue & | getMetaValue (UInt index) const |
| Returns the value corresponding to the index, or DataValue::EMPTY if not found. More... | |
| DataValue | getMetaValue (UInt index, const DataValue &default_value) const |
| Returns the value corresponding to the index, or a default value (e.g.: DataValue::EMPTY) if not found More... | |
| bool | metaValueExists (const String &name) const |
| Returns whether an entry with the given name exists. More... | |
| bool | metaValueExists (UInt index) const |
| Returns whether an entry with the given index exists. More... | |
| void | setMetaValue (const String &name, const DataValue &value) |
| Sets the DataValue corresponding to a name. More... | |
| void | setMetaValue (UInt index, const DataValue &value) |
| Sets the DataValue corresponding to an index. More... | |
| void | removeMetaValue (const String &name) |
Removes the DataValue corresponding to name if it exists. More... | |
| void | removeMetaValue (UInt index) |
Removes the DataValue corresponding to index if it exists. More... | |
| void | addMetaValues (const MetaInfoInterface &from) |
| function to copy all meta values from one object to this one More... | |
| void | getKeys (std::vector< String > &keys) const |
| Fills the given vector with a list of all keys for which a value is set. More... | |
| void | getKeys (std::vector< UInt > &keys) const |
| Fills the given vector with a list of all keys for which a value is set. More... | |
| bool | isMetaEmpty () const |
| Returns if the MetaInfo is empty. More... | |
| void | clearMetaInfo () |
| Removes all meta values. More... | |
Public Attributes | |
| std::vector< ScoreTypeRef > | assigned_scores |
Additional Inherited Members | |
| Static Public Member Functions inherited from MetaInfoInterface | |
| static MetaInfoRegistry & | metaRegistry () |
| Returns a reference to the MetaInfoRegistry. More... | |
| Protected Member Functions inherited from MetaInfoInterface | |
| void | createIfNotExists_ () |
| Creates the MetaInfo object if it does not exist. More... | |
| Protected Attributes inherited from Software | |
| String | name_ |
| String | version_ |
| Protected Attributes inherited from CVTermList | |
| std::map< String, std::vector< CVTerm > > | cv_terms_ |
| Protected Attributes inherited from MetaInfoInterface | |
| MetaInfo * | meta_ |
| Pointer to the MetaInfo object (0 by default) More... | |
Information about software used for data processing.
If the same processing is applied to multiple ID runs, e.g. if multiple files (fractions, replicates) are searched with the same search engine, store the software information only once.
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inlineexplicit |
| std::vector<ScoreTypeRef> assigned_scores |
List of score types assigned by this software, ranked by importance.
The "primary" score should be the first in the list.
Referenced by NucleicAcidSearchEngine::main_().
1.9.1 
