IDFilter::DigestionFilter Struct Reference

Is peptide evidence digestion product of some protein. More...

#include <OpenMS/PROCESSING/ID/IDFilter.h>

Collaboration diagram for IDFilter::DigestionFilter:

Public Types
typedef PeptideEvidence	argument_type

Public Member Functions
	DigestionFilter (std::vector< FASTAFile::FASTAEntry > &entries, ProteaseDigestion &digestion, bool ignore_missed_cleavages, bool methionine_cleavage)
bool	operator() (const PeptideEvidence &evidence) const
void	filterPeptideEvidences (std::vector< PeptideIdentification > &peptides)

Public Attributes
GetMatchingItems< PeptideEvidence, FASTAFile::FASTAEntry >	accession_resolver_
ProteaseDigestion &	digestion_
bool	ignore_missed_cleavages_
bool	methionine_cleavage_

Detailed Description

Is peptide evidence digestion product of some protein.

Keeps all valid products

Member Typedef Documentation

argument_type

typedef PeptideEvidence argument_type

Constructor & Destructor Documentation

DigestionFilter()

DigestionFilter ( std::vector< FASTAFile::FASTAEntry > &  entries, ProteaseDigestion &  digestion, bool  ignore_missed_cleavages, bool  methionine_cleavage  )

inline

Member Function Documentation

filterPeptideEvidences()

void filterPeptideEvidences ( std::vector< PeptideIdentification > &  peptides )

inline

operator()()

bool operator() ( const PeptideEvidence &  evidence ) const

inline

References IDFilter::GetMatchingItems< HitType, Entry >::exists(), AASequence::fromString(), PeptideEvidence::getEnd(), PeptideEvidence::getProteinAccession(), PeptideEvidence::getStart(), IDFilter::GetMatchingItems< HitType, Entry >::getValue(), PeptideEvidence::hasValidLimits(), ProteaseDigestion::isValidProduct(), and OPENMS_LOG_WARN.

Member Data Documentation

accession_resolver_

GetMatchingItems<PeptideEvidence, FASTAFile::FASTAEntry> accession_resolver_

digestion_

ProteaseDigestion& digestion_

ignore_missed_cleavages_

bool ignore_missed_cleavages_

methionine_cleavage_

bool methionine_cleavage_