#include <OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h>

Collaboration diagram for ACTrieState:

Public Member Functions
void	setQuery (const std::string &haystack)

size_t	textPos () const
	Where in the text are we currently? More...

std::string::const_iterator	textPosIt () const
	Where in the text are we currently? More...

const std::string &	getQuery () const
	The current query. More...

AA	nextValidAA ()

Public Attributes
friend	ACSpawn

std::vector< Hit >	hits
	current hits found More...

Index	tree_pos
	position in trie (for the master) More...

std::queue< ACSpawn >	spawns
	initial spawn points which are currently active and need processing More...

Private Attributes
std::string	query_
	current query ( = haystack = text) More...

std::string::const_iterator	it_q_
	position in query More...

Detailed Description

A state object for an ACTrie, i.e. dynamic information when traversing the trie (which is 'const' after construction) Useful when using multi-threading; each thread can walk the trie and keep track of its state using an instance of this class

Member Function Documentation

◆ getQuery()

const std::string& getQuery ( ) const

The current query.

◆ nextValidAA()

AA nextValidAA ( )

Return the next valid AA in the query. If the query was fully traversed, an invalid AA is returned. This moves the internal iterator for the query forwards.

◆ setQuery()

void setQuery ( const std::string & haystack )

Set a haystack (query) where the needles (patterns) are to be searched This also resets the current trie-node to ROOT, and voids the hits

◆ textPos()

size_t textPos ( ) const

Where in the text are we currently?

◆ textPosIt()

std::string::const_iterator textPosIt ( ) const

Where in the text are we currently?

Member Data Documentation

◆ ACSpawn

friend ACSpawn

◆ hits

std::vector<Hit> hits

current hits found

◆ it_q_

std::string::const_iterator it_q_

private

position in query

◆ query_

std::string query_

private

current query ( = haystack = text)

◆ spawns

std::queue<ACSpawn> spawns

initial spawn points which are currently active and need processing

◆ tree_pos

Index tree_pos

position in trie (for the master)

Public Member Functions

Public Attributes

Private Attributes