#include <string>
#include <vector>
#include <boost/shared_ptr.hpp>
#include <OpenMS/OPENSWATHALGO/OpenSwathAlgoConfig.h>

Include dependency graph for openswathalgo/include/OpenMS/OPENSWATHALGO/DATAACCESS/DataStructures.h:

This graph shows which files directly or indirectly include this file:

Classes
struct	OSBinaryDataArray
	The datastructures used by the OpenSwath interfaces. More...

struct	OSChromatogramMeta
	Identifying information for a chromatogram. More...

struct	OSChromatogram
	A single chromatogram. More...

struct	OSSpectrumMeta
	Identifying information for a spectrum. More...

struct	OSSpectrumMeta::RTLess
	Comparator for the retention time. More...

struct	OSSpectrum
	The structure that captures the generation of a peak list (including the underlying acquisitions) More...

Typedefs
typedef OSBinaryDataArray	BinaryDataArray

typedef boost::shared_ptr< BinaryDataArray >	BinaryDataArrayPtr

typedef OSChromatogramMeta	ChromatogramMeta

typedef boost::shared_ptr< ChromatogramMeta >	ChromatogramMetaPtr

typedef OSChromatogram	Chromatogram

typedef boost::shared_ptr< Chromatogram >	ChromatogramPtr

typedef OSSpectrumMeta	SpectrumMeta

typedef boost::shared_ptr< SpectrumMeta >	SpectrumMetaPtr

typedef OSSpectrum	Spectrum

typedef boost::shared_ptr< Spectrum >	SpectrumPtr

Class Documentation

◆ OpenSwath::OSBinaryDataArray

struct OpenSwath::OSBinaryDataArray

The datastructures used by the OpenSwath interfaces.

Many of them are closely related to Proteowizard data structures, originally written by Darren Kessner and released under the Apache 2.0 licence.

The following datastructures are used :

BinaryDataArray : a struct that holds a std::vector<double> with the data
ChromatogramMeta : meta information of a chromatogram (index)
Chromatogram : chromatogram data. Contains a vector of pointers to BinaryDataArray, the first one is time array (RT), the second one is intensity
SpectrumMeta : meta information of a spectrum (index, identifier, RT, ms_level)
Spectrum : spectrum data. Contains a vector of pointers to BinaryDataArray, the first one is mz array, the second one is intensity The structure into which encoded binary data goes.

Collaboration diagram for OSBinaryDataArray:

Class Members
vector< double >	data	this optional attribute may reference the 'id' attribute of the appropriate dataProcessing. the binary data.
string	description	(optional) data description for non-standard arrays.