XQuestResultXMLFile Member List

This is the complete list of members for XQuestResultXMLFile, including all inherited members.

CMD enum value	ProgressLogger
current_logger_	ProgressLogger	mutableprotected
endProgress(UInt64 bytes_processed=0) const	ProgressLogger
enforced_encoding_	XMLFile	protected
enforceEncoding_(const String &encoding)	XMLFile	protected
getLogType() const	ProgressLogger
getMaxScore() const	XQuestResultXMLFile
getMinScore() const	XQuestResultXMLFile
getNumberOfHits() const	XQuestResultXMLFile
getVersion() const	XMLFile
getxQuestBase64EncodedSpectrum_(const PeakSpectrum &spec, const String &header, const bool &test_mode=false)	XQuestResultXMLFile	privatestatic
GUI enum value	ProgressLogger
isValid(const String &filename, std::ostream &os)	XMLFile
last_invoke_	ProgressLogger	mutableprotected
load(const String &filename, std::vector< PeptideIdentification > &pep_ids, std::vector< ProteinIdentification > &prot_ids)	XQuestResultXMLFile
LogType enum name	ProgressLogger
max_score_	XQuestResultXMLFile	private
min_score_	XQuestResultXMLFile	private
n_hits_	XQuestResultXMLFile	private
nextProgress() const	ProgressLogger
NONE enum value	ProgressLogger
operator=(const ProgressLogger &other)	ProgressLogger
parse_(const String &filename, XMLHandler *handler)	XMLFile	protected
parseBuffer_(const std::string &buffer, XMLHandler *handler)	XMLFile	protected
ProgressLogger()	ProgressLogger
ProgressLogger(const ProgressLogger &other)	ProgressLogger
recursion_depth_	ProgressLogger	protectedstatic
save_(const String &filename, XMLHandler *handler) const	XMLFile	protected
schema_location_	XMLFile	protected
schema_version_	XMLFile	protected
setLogger(ProgressLoggerImpl *logger)	ProgressLogger
setLogType(LogType type) const	ProgressLogger
setProgress(SignedSize value) const	ProgressLogger
startProgress(SignedSize begin, SignedSize end, const String &label) const	ProgressLogger
store(const String &filename, const std::vector< ProteinIdentification > &poid, const std::vector< PeptideIdentification > &peid) const	XQuestResultXMLFile
type_	ProgressLogger	mutableprotected
wrap_(const String &input, Size width, String &output)	XQuestResultXMLFile	privatestatic
writeXQuestXMLSpec(const String &out_file, const String &base_name, const OPXLDataStructs::PreprocessedPairSpectra &preprocessed_pair_spectra, const std::vector< std::pair< Size, Size > > &spectrum_pairs, const std::vector< std::vector< OPXLDataStructs::CrossLinkSpectrumMatch > > &all_top_csms, const PeakMap &spectra, const bool &test_mode=false)	XQuestResultXMLFile	static
writeXQuestXMLSpec(const String &out_file, const String &base_name, const std::vector< std::vector< OPXLDataStructs::CrossLinkSpectrumMatch > > &all_top_csms, const PeakMap &spectra, const bool &test_mode=false)	XQuestResultXMLFile	static
XMLFile()	XMLFile
XMLFile(const String &schema_location, const String &version)	XMLFile
XQuestResultXMLFile()	XQuestResultXMLFile
~ProgressLogger()	ProgressLogger	virtual
~XMLFile()	XMLFile	virtual
~XQuestResultXMLFile() override	XQuestResultXMLFile