ProteinIdentification Member List

This is the complete list of members for ProteinIdentification, including all inherited members.

addMetaValues(const MetaInfoInterface &from)	MetaInfoInterface
addPrimaryMSRunPath(const String &s, bool raw=false)	ProteinIdentification
addPrimaryMSRunPath(const StringList &s, bool raw=false)	ProteinIdentification
assignRanks()	ProteinIdentification
AVERAGE enum value	ProteinIdentification
clearMetaInfo()	MetaInfoInterface
computeCoverage(const std::vector< PeptideIdentification > &pep_ids)	ProteinIdentification
computeCoverage(const ConsensusMap &cmap, bool use_unassigned_ids)	ProteinIdentification
computeCoverageFromEvidenceMapping_(const std::unordered_map< String, std::set< PeptideEvidence >> &map)	ProteinIdentification	private
computeModifications(const std::vector< PeptideIdentification > &pep_ids, const StringList &skip_modifications)	ProteinIdentification
computeModifications(const ConsensusMap &cmap, const StringList &skip_modifications, bool use_unassigned_ids)	ProteinIdentification
copyMetaDataOnly(const ProteinIdentification &)	ProteinIdentification
createIfNotExists_()	MetaInfoInterface	inlineprotected
date_	ProteinIdentification	protected
fillEvidenceMapping_(std::unordered_map< String, std::set< PeptideEvidence > > &map_acc_2_evidence, const std::vector< PeptideIdentification > &pep_ids) const	ProteinIdentification	private
fillIndistinguishableGroupsWithSingletons()	ProteinIdentification
fillModMapping_(const std::vector< PeptideIdentification > &pep_ids, const StringList &skip_modifications, std::unordered_map< String, std::set< std::pair< Size, ResidueModification >>> &prot2mod) const	ProteinIdentification	private
findHit(const String &accession)	ProteinIdentification
getDateTime() const	ProteinIdentification
getHits() const	ProteinIdentification
getHits()	ProteinIdentification
getIdentifier() const	ProteinIdentification
getIndistinguishableProteins() const	ProteinIdentification
getIndistinguishableProteins()	ProteinIdentification
getInferenceEngine() const	ProteinIdentification
getInferenceEngineVersion() const	ProteinIdentification
getKeys(std::vector< String > &keys) const	MetaInfoInterface
getKeys(std::vector< UInt > &keys) const	MetaInfoInterface
getMetaValue(const String &name) const	MetaInfoInterface
getMetaValue(const String &name, const DataValue &default_value) const	MetaInfoInterface
getMetaValue(UInt index) const	MetaInfoInterface
getMetaValue(UInt index, const DataValue &default_value) const	MetaInfoInterface
getOriginalSearchEngineName() const	ProteinIdentification
getPrimaryMSRunPath(StringList &output, bool raw=false) const	ProteinIdentification
getProteinGroups() const	ProteinIdentification
getProteinGroups()	ProteinIdentification
getScoreType() const	ProteinIdentification
getSearchEngine() const	ProteinIdentification
getSearchEngineSettingsAsPairs(const String &se="") const	ProteinIdentification
getSearchEngineVersion() const	ProteinIdentification
getSearchParameters() const	ProteinIdentification
getSearchParameters()	ProteinIdentification
getSignificanceThreshold() const	ProteinIdentification
hasInferenceData() const	ProteinIdentification
hasInferenceEngineAsSearchEngine() const	ProteinIdentification
higher_score_better_	ProteinIdentification	protected
HitType typedef	ProteinIdentification
id_	ProteinIdentification	protected
indistinguishable_proteins_	ProteinIdentification	protected
insertHit(const ProteinHit &input)	ProteinIdentification
insertHit(ProteinHit &&input)	ProteinIdentification
insertIndistinguishableProteins(const ProteinGroup &group)	ProteinIdentification
insertProteinGroup(const ProteinGroup &group)	ProteinIdentification
isHigherScoreBetter() const	ProteinIdentification
isMetaEmpty() const	MetaInfoInterface
meta_	MetaInfoInterface	protected
MetaInfoInterface()	MetaInfoInterface
MetaInfoInterface(const MetaInfoInterface &rhs)	MetaInfoInterface
MetaInfoInterface(MetaInfoInterface &&) noexcept	MetaInfoInterface
metaRegistry()	MetaInfoInterface	static
metaValueExists(const String &name) const	MetaInfoInterface
metaValueExists(UInt index) const	MetaInfoInterface
MONOISOTOPIC enum value	ProteinIdentification
NamesOfPeakMassType	ProteinIdentification	static
nrPrimaryMSRunPaths(bool raw=false) const	ProteinIdentification
operator!=(const ProteinIdentification &rhs) const	ProteinIdentification
OpenMS::MetaInfoInterface::operator!=(const MetaInfoInterface &rhs) const	MetaInfoInterface
operator=(const ProteinIdentification &)=default	ProteinIdentification
operator=(ProteinIdentification &&)=default	ProteinIdentification
OpenMS::MetaInfoInterface::operator=(const MetaInfoInterface &rhs)	MetaInfoInterface
OpenMS::MetaInfoInterface::operator=(MetaInfoInterface &&) noexcept	MetaInfoInterface
operator==(const ProteinIdentification &rhs) const	ProteinIdentification
OpenMS::MetaInfoInterface::operator==(const MetaInfoInterface &rhs) const	MetaInfoInterface
PeakMassType enum name	ProteinIdentification
peptideIDsMergeable(const ProteinIdentification &id_run, const String &experiment_type) const	ProteinIdentification
protein_groups_	ProteinIdentification	protected
protein_hits_	ProteinIdentification	protected
protein_score_type_	ProteinIdentification	protected
protein_significance_threshold_	ProteinIdentification	protected
ProteinIdentification()	ProteinIdentification
ProteinIdentification(const ProteinIdentification &)=default	ProteinIdentification
ProteinIdentification(ProteinIdentification &&)=default	ProteinIdentification
removeMetaValue(const String &name)	MetaInfoInterface
removeMetaValue(UInt index)	MetaInfoInterface
search_engine_	ProteinIdentification	protected
search_engine_version_	ProteinIdentification	protected
search_parameters_	ProteinIdentification	protected
setDateTime(const DateTime &date)	ProteinIdentification
setHigherScoreBetter(bool higher_is_better)	ProteinIdentification
setHits(const std::vector< ProteinHit > &hits)	ProteinIdentification
setIdentifier(const String &id)	ProteinIdentification
setInferenceEngine(const String &search_engine)	ProteinIdentification
setInferenceEngineVersion(const String &inference_engine_version)	ProteinIdentification
setMetaValue(const String &name, const DataValue &value)	MetaInfoInterface
setMetaValue(UInt index, const DataValue &value)	MetaInfoInterface
setPrimaryMSRunPath(const StringList &s, bool raw=false)	ProteinIdentification
setPrimaryMSRunPath(const StringList &s, MSExperiment &e)	ProteinIdentification
setScoreType(const String &type)	ProteinIdentification
setSearchEngine(const String &search_engine)	ProteinIdentification
setSearchEngineVersion(const String &search_engine_version)	ProteinIdentification
setSearchParameters(const SearchParameters &search_parameters)	ProteinIdentification
setSearchParameters(SearchParameters &&search_parameters)	ProteinIdentification
setSignificanceThreshold(double value)	ProteinIdentification
SIZE_OF_PEAKMASSTYPE enum value	ProteinIdentification
sort()	ProteinIdentification
swap(MetaInfoInterface &rhs)	MetaInfoInterface
~MetaInfoInterface()	MetaInfoInterface
~ProteinIdentification()	ProteinIdentification	virtual