MRMFeatureFilter Member List

This is the complete list of members for MRMFeatureFilter, including all inherited members.

accumulateFilterValues(std::vector< MRMFeatureQC > &filter_values, const std::vector< FeatureMap > &samples, const MRMFeatureQC &filter_template, const TargetedExperiment &transitions) const	MRMFeatureFilter
calculateFilterValuesMean(MRMFeatureQC &filter_mean, const std::vector< MRMFeatureQC > &filter_values, const MRMFeatureQC &filter_template) const	MRMFeatureFilter
calculateFilterValuesPercRSD(MRMFeatureQC &filter_rsd, const MRMFeatureQC &filter_mean, const MRMFeatureQC &filter_var) const	MRMFeatureFilter
calculateFilterValuesVar(MRMFeatureQC &filter_var, const std::vector< MRMFeatureQC > &filter_values, const MRMFeatureQC &filter_mean, const MRMFeatureQC &filter_template) const	MRMFeatureFilter
calculateIonRatio(const Feature &component_1, const Feature &component_2, const String &feature_name) const	MRMFeatureFilter
calculateResolution(Feature &component_1, Feature &component_2) const	MRMFeatureFilter
calculateRTDifference(Feature &component_1, Feature &component_2) const	MRMFeatureFilter
check_defaults_	DefaultParamHandler	protected
checkMetaValue(const Feature &component, const String &meta_value_key, const double &meta_value_l, const double &meta_value_u, bool &key_exists) const	MRMFeatureFilter
checkRange(const T &value, const T &value_l, const T &value_u) const	MRMFeatureFilter
countLabelsAndTransitionTypes(const Feature &component_group, const TargetedExperiment &transitions) const	MRMFeatureFilter
DefaultParamHandler(const String &name)	DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)	DefaultParamHandler
DefaultParamHandler()	DefaultParamHandler	private
defaults_	DefaultParamHandler	protected
defaultsToParam_()	DefaultParamHandler	protected
error_name_	DefaultParamHandler	protected
EstimateBackgroundInterferences(const std::vector< FeatureMap > &samples, MRMFeatureQC &filter_template, const TargetedExperiment &transitions) const	MRMFeatureFilter
EstimateDefaultMRMFeatureQCValues(const std::vector< FeatureMap > &samples, MRMFeatureQC &filter_template, const TargetedExperiment &transitions, const bool &init_template_values) const	MRMFeatureFilter
EstimatePercRSD(const std::vector< FeatureMap > &samples, MRMFeatureQC &filter_template, const TargetedExperiment &transitions) const	MRMFeatureFilter
FilterFeatureMap(FeatureMap &features, const MRMFeatureQC &filter_criteria, const TargetedExperiment &transitions)	MRMFeatureFilter
FilterFeatureMapBackgroundInterference(FeatureMap &features, const MRMFeatureQC &filter_criteria, const MRMFeatureQC &filter_values)	MRMFeatureFilter
FilterFeatureMapPercRSD(FeatureMap &features, const MRMFeatureQC &filter_criteria, const MRMFeatureQC &filter_values)	MRMFeatureFilter
flag_or_filter_	MRMFeatureFilter	private
getDefaultParameters(Param &params) const	MRMFeatureFilter
getDefaults() const	DefaultParamHandler
getName() const	DefaultParamHandler
getParameters() const	DefaultParamHandler
getSubsections() const	DefaultParamHandler
getUniqueSorted(const StringList &messages) const	MRMFeatureFilter
initMetaValue(const Feature &component, const String &meta_value_key, double &meta_value_l, double &meta_value_u, bool &key_exists) const	MRMFeatureFilter
initRange(const T &value, T &value_l, T &value_u) const	MRMFeatureFilter
MRMFeatureFilter()	MRMFeatureFilter
operator=(const DefaultParamHandler &rhs)	DefaultParamHandler
operator==(const DefaultParamHandler &rhs) const	DefaultParamHandler	virtual
param_	DefaultParamHandler	protected
setMetaValue(const Feature &component, const String &meta_value_key, double &meta_value_l, double &meta_value_u, bool &key_exists) const	MRMFeatureFilter
setName(const String &name)	DefaultParamHandler
setParameters(const Param &param)	DefaultParamHandler
setRange(const T &value, T &value_l, T &value_u) const	MRMFeatureFilter
subsections_	DefaultParamHandler	protected
TransferLLOQAndULOQToCalculatedConcentrationBounds(const std::vector< AbsoluteQuantitationMethod > &quantitation_method, MRMFeatureQC &filter_template)	MRMFeatureFilter
updateMembers_() override	MRMFeatureFilter	virtual
updateMetaValue(const Feature &component, const String &meta_value_key, double &meta_value_l, double &meta_value_u, bool &key_exists) const	MRMFeatureFilter
updateRange(const T &value, T &value_l, T &value_u) const	MRMFeatureFilter
warn_empty_defaults_	DefaultParamHandler	protected
writeParametersToMetaValues(const Param &write_this, MetaInfoInterface &write_here, const String &key_prefix="")	DefaultParamHandler	static
zeroFilterValues(MRMFeatureQC &filter_zeros, const MRMFeatureQC &filter_template) const	MRMFeatureFilter
~DefaultParamHandler()	DefaultParamHandler	virtual
~MRMFeatureFilter() override	MRMFeatureFilter