OpenMS
|
This is the complete list of members for IdentificationDataConverter, including all inherited members.
addMzTabMoleculeParentContext_(const IdentificationData::ParentMatch &match, MzTabOligonucleotideSectionRow &row) | IdentificationDataConverter | protectedstatic |
addMzTabMoleculeParentContext_(const IdentificationData::ParentMatch &match, MzTabPeptideSectionRow &row) | IdentificationDataConverter | protectedstatic |
addMzTabSEScores_(const std::map< IdentificationData::ScoreTypeRef, Size > &scores, std::map< Size, MzTabParameter > &output) | IdentificationDataConverter | protectedstatic |
exportConsensusIDs(ConsensusMap &consensus, bool clear_original=true) | IdentificationDataConverter | static |
exportDBSearchParameters_(IdentificationData::SearchParamRef ref) | IdentificationDataConverter | protectedstatic |
exportFeatureIDs(FeatureMap &features, bool clear_original=true) | IdentificationDataConverter | static |
exportIDs(const IdentificationData &id_data, std::vector< ProteinIdentification > &proteins, std::vector< PeptideIdentification > &peptides, bool export_ids_wo_scores=false) | IdentificationDataConverter | static |
exportMSRunInformation_(IdentificationData::ProcessingStepRef step_ref, ProteinIdentification &protein) | IdentificationDataConverter | protectedstatic |
exportMzTab(const IdentificationData &id_data) | IdentificationDataConverter | static |
exportObservationMatchToMzTab_(const String &sequence, const IdentificationData::ObservationMatch &match, double calc_mass, std::vector< MzTabSectionRow > &output, std::map< IdentificationData::ScoreTypeRef, Size > &score_map, std::map< IdentificationData::InputFileRef, Size > &file_map) | IdentificationDataConverter | inlineprotectedstatic |
exportParentMatches(const IdentificationData::ParentMatches &parent_matches, PeptideHit &hit) | IdentificationDataConverter | static |
exportParentSequenceToMzTab_(const IdentificationData::ParentSequence &parent, std::vector< MzTabSectionRow > &output, std::map< IdentificationData::ScoreTypeRef, Size > &score_map) | IdentificationDataConverter | inlineprotectedstatic |
exportPeptideOrOligoToMzTab_(const IdentSeq &identified, std::vector< MzTabSectionRow > &output, std::map< IdentificationData::ScoreTypeRef, Size > &score_map) | IdentificationDataConverter | inlineprotectedstatic |
exportStepsAndScoresToMzTab_(const IdentificationData::AppliedProcessingSteps &steps_and_scores, MzTabParameterList &steps_out, std::map< Size, MzTabDouble > &scores_out, std::map< IdentificationData::ScoreTypeRef, Size > &score_map) | IdentificationDataConverter | protectedstatic |
handleFeatureExport_(Feature &feature, const IntList &indexes, IdentificationData &id_data, Size &id_counter) | IdentificationDataConverter | protectedstatic |
handleFeatureImport_(Feature &feature, const IntList &indexes, std::vector< PeptideIdentification > &peptides, Size &id_counter, bool clear_original) | IdentificationDataConverter | protectedstatic |
importConsensusIDs(ConsensusMap &consensus, bool clear_original=true) | IdentificationDataConverter | static |
importDBSearchParameters_(const ProteinIdentification::SearchParameters &pisp, IdentificationData &id_data) | IdentificationDataConverter | protectedstatic |
importFeatureIDs(FeatureMap &features, bool clear_original=true) | IdentificationDataConverter | static |
importIDs(IdentificationData &id_data, const std::vector< ProteinIdentification > &proteins, const std::vector< PeptideIdentification > &peptides) | IdentificationDataConverter | static |
importSequences(IdentificationData &id_data, const std::vector< FASTAFile::FASTAEntry > &fasta, IdentificationData::MoleculeType type=IdentificationData::MoleculeType::PROTEIN, const String &decoy_pattern="") | IdentificationDataConverter | static |
StepOpt typedef | IdentificationDataConverter | protected |