FeatureFinderAlgorithmMetaboIdent Member List

This is the complete list of members for FeatureFinderAlgorithmMetaboIdent, including all inherited members.

addTargetAnnotations_(FeatureMap &features)	FeatureFinderAlgorithmMetaboIdent	protected
addTargetRT_(TargetedExperiment::Compound &target, double rt)	FeatureFinderAlgorithmMetaboIdent	protected
addTargetToLibrary_(const String &name, const String &formula, double mass, const std::vector< Int > &charges, const std::vector< double > &rts, std::vector< double > rt_ranges, const std::vector< double > &iso_distrib)	FeatureFinderAlgorithmMetaboIdent	protected
annotateFeatures_(FeatureMap &features)	FeatureFinderAlgorithmMetaboIdent	protected
calculateMZ_(double mass, Int charge) const	FeatureFinderAlgorithmMetaboIdent	protected
candidates_out_	FeatureFinderAlgorithmMetaboIdent	protected
check_defaults_	DefaultParamHandler	protected
chrom_data_	FeatureFinderAlgorithmMetaboIdent	protected
debug_level_	FeatureFinderAlgorithmMetaboIdent	protected
DefaultParamHandler(const String &name)	DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)	DefaultParamHandler
DefaultParamHandler()	DefaultParamHandler	private
defaults_	DefaultParamHandler	protected
defaultsToParam_()	DefaultParamHandler	protected
elution_model_	FeatureFinderAlgorithmMetaboIdent	protected
ensureConvexHulls_(Feature &feature) const	FeatureFinderAlgorithmMetaboIdent	protected
error_name_	DefaultParamHandler	protected
extractTransformations_(const FeatureMap &features)	FeatureFinderAlgorithmMetaboIdent	protected
feat_finder_	FeatureFinderAlgorithmMetaboIdent	protected
feature_compare_	FeatureFinderAlgorithmMetaboIdent	protected
feature_filter_	FeatureFinderAlgorithmMetaboIdent	protected
FeatureBoundsMap typedef	FeatureFinderAlgorithmMetaboIdent	protected
FeatureFinderAlgorithmMetaboIdent()	FeatureFinderAlgorithmMetaboIdent
FeatureGroup typedef	FeatureFinderAlgorithmMetaboIdent	protected
generateTransitions_(const String &target_id, double mz, Int charge, const IsotopeDistribution &iso_dist)	FeatureFinderAlgorithmMetaboIdent	protected
getChromatograms() const	FeatureFinderAlgorithmMetaboIdent	inline
getChromatograms()	FeatureFinderAlgorithmMetaboIdent	inline
getDefaults() const	DefaultParamHandler
getLibrary() const	FeatureFinderAlgorithmMetaboIdent	inline
getMSData()	FeatureFinderAlgorithmMetaboIdent	inline
getMSData() const	FeatureFinderAlgorithmMetaboIdent	inline
getName() const	DefaultParamHandler
getNShared() const	FeatureFinderAlgorithmMetaboIdent	inline
getParameters() const	DefaultParamHandler
getSubsections() const	DefaultParamHandler
getTransformations() const	FeatureFinderAlgorithmMetaboIdent	inline
iso_gen_	FeatureFinderAlgorithmMetaboIdent	protected
isotope_pmin_	FeatureFinderAlgorithmMetaboIdent	protected
isotope_probs_	FeatureFinderAlgorithmMetaboIdent	protected
library_	FeatureFinderAlgorithmMetaboIdent	protected
MassTrace typedef	FeatureFinderAlgorithmMetaboIdent	protected
MassTraces typedef	FeatureFinderAlgorithmMetaboIdent	protected
min_peak_width_	FeatureFinderAlgorithmMetaboIdent	protected
ms_data_	FeatureFinderAlgorithmMetaboIdent	protected
mz_window_	FeatureFinderAlgorithmMetaboIdent	protected
mz_window_ppm_	FeatureFinderAlgorithmMetaboIdent	protected
n_isotopes_	FeatureFinderAlgorithmMetaboIdent	protected
n_shared_	FeatureFinderAlgorithmMetaboIdent	protected
operator=(const DefaultParamHandler &rhs)	DefaultParamHandler
operator==(const DefaultParamHandler &rhs) const	DefaultParamHandler	virtual
param_	DefaultParamHandler	protected
peak_width_	FeatureFinderAlgorithmMetaboIdent	protected
prettyPrintCompound(const TargetedExperiment::Compound &compound)	FeatureFinderAlgorithmMetaboIdent
rt_window_	FeatureFinderAlgorithmMetaboIdent	protected
run(const std::vector< FeatureFinderMetaboIdentCompound > &metaboIdentTable, FeatureMap &features, const String &spectra_file="")	FeatureFinderAlgorithmMetaboIdent
selectFeaturesFromCandidates_(FeatureMap &features)	FeatureFinderAlgorithmMetaboIdent	protected
setMSData(const PeakMap &m)	FeatureFinderAlgorithmMetaboIdent
setMSData(PeakMap &&m)	FeatureFinderAlgorithmMetaboIdent
setName(const String &name)	DefaultParamHandler
setParameters(const Param &param)	DefaultParamHandler
signal_to_noise_	FeatureFinderAlgorithmMetaboIdent	protected
subsections_	DefaultParamHandler	protected
target_rts_	FeatureFinderAlgorithmMetaboIdent	protected
trafo_	FeatureFinderAlgorithmMetaboIdent	protected
updateMembers_() override	FeatureFinderAlgorithmMetaboIdent	protectedvirtual
warn_empty_defaults_	DefaultParamHandler	protected
writeParametersToMetaValues(const Param &write_this, MetaInfoInterface &write_here, const String &key_prefix="")	DefaultParamHandler	static
~DefaultParamHandler()	DefaultParamHandler	virtual