DBSuitability Member List

This is the complete list of members for DBSuitability, including all inherited members.

appendDecoys_(std::vector< FASTAFile::FASTAEntry > &fasta) const	DBSuitability	private
calculateCorrectionFactor_(const SuitabilityData &data, const SuitabilityData &data_sampled, double sampling_rate) const	DBSuitability	private
calculateSuitability_(const std::vector< PeptideIdentification > &pep_ids, SuitabilityData &data) const	DBSuitability	private
check_defaults_	DefaultParamHandler	protected
checkScoreBetterThanThreshold_(const PeptideHit &hit, double threshold, bool higher_score_better) const	DBSuitability	private
compute(std::vector< PeptideIdentification > &&pep_ids, const MSExperiment &exp, const std::vector< FASTAFile::FASTAEntry > &original_fasta, const std::vector< FASTAFile::FASTAEntry > &novo_fasta, const ProteinIdentification::SearchParameters &search_params)	DBSuitability
DBSuitability()	DBSuitability
DBSuitability_friend class	DBSuitability	friend
decoy_pattern_	DBSuitability	private
DefaultParamHandler(const String &name)	DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)	DefaultParamHandler
DefaultParamHandler()	DefaultParamHandler	private
defaults_	DefaultParamHandler	protected
defaultsToParam_()	DefaultParamHandler	protected
error_name_	DefaultParamHandler	protected
extractScore_(const PeptideHit &pep_hit) const	DBSuitability	private
extractSearchAdapterInfoFromMetaValues_(const ProteinIdentification::SearchParameters &meta_values) const	DBSuitability	private
getDecoyCutOff_(const std::vector< PeptideIdentification > &pep_ids, double reranking_cutoff_percentile) const	DBSuitability	private
getDecoyDiff_(const PeptideIdentification &pep_id) const	DBSuitability	private
getDefaults() const	DefaultParamHandler
getIndexWithMedianNovoHits_(const std::vector< SuitabilityData > &data) const	DBSuitability	private
getName() const	DefaultParamHandler
getParameters() const	DefaultParamHandler
getResults() const	DBSuitability
getScoreMatchingFDR_(const std::vector< PeptideIdentification > &pep_ids, double FDR, const String &score_name, bool higher_score_better) const	DBSuitability	private
getSubsampledFasta_(const std::vector< FASTAFile::FASTAEntry > &fasta_data, double subsampling_rate) const	DBSuitability	private
getSubsections() const	DefaultParamHandler
isNovoHit_(const PeptideHit &hit) const	DBSuitability	private
numberOfUniqueProteins_(const std::vector< PeptideIdentification > &peps, UInt number_of_hits=1) const	DBSuitability	private
operator=(const DefaultParamHandler &rhs)	DefaultParamHandler
operator==(const DefaultParamHandler &rhs) const	DefaultParamHandler	virtual
param_	DefaultParamHandler	protected
results_	DBSuitability	private
runIdentificationSearch_(const MSExperiment &exp, const std::vector< FASTAFile::FASTAEntry > &fasta_data, const String &adapter_name, Param &parameters) const	DBSuitability	private
setName(const String &name)	DefaultParamHandler
setParameters(const Param &param)	DefaultParamHandler
subsections_	DefaultParamHandler	protected
updateMembers_()	DefaultParamHandler	protectedvirtual
warn_empty_defaults_	DefaultParamHandler	protected
writeIniFile_(const Param &parameters, const String &filename) const	DBSuitability	private
writeParametersToMetaValues(const Param &write_this, MetaInfoInterface &write_here, const String &key_prefix="")	DefaultParamHandler	static
~DBSuitability() override=default	DBSuitability
~DefaultParamHandler()	DefaultParamHandler	virtual