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OpenMS
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This is the complete list of members for BasicProteinInferenceAlgorithm, including all inherited members.
| aggFromString_(const std::string &method_string) const | BasicProteinInferenceAlgorithm | private |
| aggFunFromEnum_(const BasicProteinInferenceAlgorithm::AggregationMethod &agg_method, bool higher_better) const | BasicProteinInferenceAlgorithm | private |
| aggregatePeptideScores_(SequenceToChargeToPSM &best_pep, std::vector< PeptideIdentification > &pep_ids, const String &overall_score_type, bool higher_better, const std::string &run_id) const | BasicProteinInferenceAlgorithm | private |
| AggregationMethod enum name | BasicProteinInferenceAlgorithm | |
| BasicProteinInferenceAlgorithm() | BasicProteinInferenceAlgorithm | |
| check_defaults_ | DefaultParamHandler | protected |
| checkCompat_(const String &score_type, const AggregationMethod &aggregation_method) const | BasicProteinInferenceAlgorithm | private |
| checkCompat_(const IDScoreSwitcherAlgorithm::ScoreType &score_type, const AggregationMethod &aggregation_method) const | BasicProteinInferenceAlgorithm | private |
| CMD enum value | ProgressLogger | |
| current_logger_ | ProgressLogger | mutableprotected |
| DefaultParamHandler(const String &name) | DefaultParamHandler | |
| DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler | |
| DefaultParamHandler() | DefaultParamHandler | private |
| defaults_ | DefaultParamHandler | protected |
| defaultsToParam_() | DefaultParamHandler | protected |
| endProgress(UInt64 bytes_processed=0) const | ProgressLogger | |
| error_name_ | DefaultParamHandler | protected |
| fptr typedef | BasicProteinInferenceAlgorithm | private |
| getDefaults() const | DefaultParamHandler | |
| getInitScoreForAggMethod_(const AggregationMethod &aggregation_method, bool higher_better) const | BasicProteinInferenceAlgorithm | private |
| getLogType() const | ProgressLogger | |
| getName() const | DefaultParamHandler | |
| getParameters() const | DefaultParamHandler | |
| getSubsections() const | DefaultParamHandler | |
| GUI enum value | ProgressLogger | |
| last_invoke_ | ProgressLogger | mutableprotected |
| LogType enum name | ProgressLogger | |
| nextProgress() const | ProgressLogger | |
| NONE enum value | ProgressLogger | |
| OpenMS::operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | |
| OpenMS::ProgressLogger::operator=(const ProgressLogger &other) | ProgressLogger | |
| operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual |
| param_ | DefaultParamHandler | protected |
| processRun_(std::unordered_map< std::string, std::pair< ProteinHit *, Size >> &acc_to_protein_hitP_and_count, SequenceToChargeToPSM &best_pep, ProteinIdentification &prot_run, std::vector< PeptideIdentification > &pep_ids) const | BasicProteinInferenceAlgorithm | private |
| ProgressLogger() | ProgressLogger | |
| ProgressLogger(const ProgressLogger &other) | ProgressLogger | |
| recursion_depth_ | ProgressLogger | protectedstatic |
| run(std::vector< PeptideIdentification > &pep_ids, std::vector< ProteinIdentification > &prot_ids) const | BasicProteinInferenceAlgorithm | |
| run(std::vector< PeptideIdentification > &pep_ids, ProteinIdentification &prot_id) const | BasicProteinInferenceAlgorithm | |
| run(ConsensusMap &cmap, ProteinIdentification &prot_id, bool include_unassigned) const | BasicProteinInferenceAlgorithm | |
| SequenceToChargeToPSM typedef | BasicProteinInferenceAlgorithm | |
| setLogger(ProgressLoggerImpl *logger) | ProgressLogger | |
| setLogType(LogType type) const | ProgressLogger | |
| setName(const String &name) | DefaultParamHandler | |
| setParameters(const Param ¶m) | DefaultParamHandler | |
| setProgress(SignedSize value) const | ProgressLogger | |
| startProgress(SignedSize begin, SignedSize end, const String &label) const | ProgressLogger | |
| subsections_ | DefaultParamHandler | protected |
| type_ | ProgressLogger | mutableprotected |
| updateMembers_() | DefaultParamHandler | protectedvirtual |
| updateProteinScores_(std::unordered_map< std::string, std::pair< ProteinHit *, Size >> &acc_to_protein_hitP_and_count, const SequenceToChargeToPSM &best_pep, bool pep_scores, bool higher_better) const | BasicProteinInferenceAlgorithm | private |
| warn_empty_defaults_ | DefaultParamHandler | protected |
| writeParametersToMetaValues(const Param &write_this, MetaInfoInterface &write_here, const String &key_prefix="") | DefaultParamHandler | static |
| ~DefaultParamHandler() | DefaultParamHandler | virtual |
| ~ProgressLogger() | ProgressLogger | virtual |
1.9.1 
