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OpenMS
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#include <OpenMS/APPLICATIONS/TOPPBase.h>#include <OpenMS/CHEMISTRY/ProteaseDB.h>#include <OpenMS/CHEMISTRY/ProteaseDigestion.h>#include <OpenMS/CHEMISTRY/SpectrumAnnotator.h>#include <OpenMS/CONCEPT/Constants.h>#include <OpenMS/FORMAT/FileHandler.h>#include <OpenMS/FORMAT/FileTypes.h>#include <OpenMS/FORMAT/IdXMLFile.h>#include <OpenMS/FORMAT/MascotXMLFile.h>#include <OpenMS/FORMAT/MzIdentMLFile.h>#include <OpenMS/FORMAT/OMSFile.h>#include <OpenMS/FORMAT/OMSSAXMLFile.h>#include <OpenMS/FORMAT/PepXMLFile.h>#include <OpenMS/FORMAT/PercolatorOutfile.h>#include <OpenMS/FORMAT/ProtXMLFile.h>#include <OpenMS/FORMAT/SequestOutfile.h>#include <OpenMS/FORMAT/TextFile.h>#include <OpenMS/FORMAT/XQuestResultXMLFile.h>#include <OpenMS/KERNEL/MSExperiment.h>#include <OpenMS/METADATA/ID/IdentificationDataConverter.h>#include <OpenMS/FORMAT/XTandemXMLFile.h>#include <OpenMS/FORMAT/MzMLFile.h>#include <OpenMS/SYSTEM/File.h>