OpenMS
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#include <OpenMS/DATASTRUCTURES/DefaultParamHandler.h>
#include <OpenMS/METADATA/ID/IdentificationData.h>
#include <OpenMS/METADATA/PeptideIdentification.h>
#include <OpenMS/METADATA/ProteinIdentification.h>
#include <OpenMS/KERNEL/ConsensusMap.h>
#include <unordered_map>
#include <vector>
#include <unordered_set>
Go to the source code of this file.
Classes | |
class | FalseDiscoveryRate |
Calculates false discovery rates (FDR) from identifications. More... | |
class | FalseDiscoveryRate::DecoyStringHelper |
Finds decoy strings in ProteinIdentification runs. More... | |
struct | FalseDiscoveryRate::DecoyStringHelper::Result |
Finds the most common decoy string in the accessions of proteins . Checks for suffix and prefix and some common decoy strings. Only successful if more than 30% had a common string. More... | |
Namespaces | |
OpenMS | |
Main OpenMS namespace. | |
struct OpenMS::FalseDiscoveryRate::DecoyStringHelper::Result |
Finds the most common decoy string in the accessions of proteins
. Checks for suffix and prefix and some common decoy strings. Only successful if more than 30% had a common string.
A result of the findDecoyString function
proteins | Input proteins with accessions |
Class Members | ||
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bool | is_prefix | on success, was it a prefix or suffix |
String | name | on success, what was the decoy string? |
bool | success | did more than 30% of proteins have the same prefix or suffix |