FASTAFile.h File Reference

#include <OpenMS/CONCEPT/Exception.h>
#include <OpenMS/DATASTRUCTURES/String.h>
#include <OpenMS/CONCEPT/ProgressLogger.h>
#include <fstream>
#include <utility>
#include <vector>

Include dependency graph for FASTAFile.h:

This graph shows which files directly or indirectly include this file:

Go to the source code of this file.

Classes
class	FASTAFile
	This class serves for reading in and writing FASTA files If the protein/gene sequence contains unusual symbols (such as translation end (*)), they will be kept! You can use aggregate methods load() and store() to read/write a set of protein sequences at the cost of memory. More...
struct	FASTAFile::FASTAEntry
	FASTA entry type (identifier, description and sequence) The first String corresponds to the identifier that is written after the > in the FASTA file. The part after the first whitespace is stored in description and the text from the next line until the next > (exclusive) is stored in sequence. More...

Namespaces
	OpenMS
	Main OpenMS namespace.