Contaminants.h File Reference

#include <OpenMS/FORMAT/FASTAFile.h>
#include <OpenMS/KERNEL/FeatureMap.h>
#include <OpenMS/METADATA/PeptideIdentification.h>
#include <OpenMS/QC/QCBase.h>
#include <unordered_set>

Include dependency graph for Contaminants.h:

This graph shows which files directly or indirectly include this file:

Go to the source code of this file.

Classes
class	Contaminants
	This class is a metric for the QualityControl TOPP tool. More...
struct	Contaminants::ContaminantsSummary
	structure for storing results More...

Namespaces
	OpenMS
	Main OpenMS namespace.

---

Class Documentation

OpenMS::Contaminants::ContaminantsSummary

struct OpenMS::Contaminants::ContaminantsSummary

structure for storing results

Collaboration diagram for Contaminants::ContaminantsSummary:

Class Members
double	all_contaminants_ratio	(#all contaminants/ #peptides in all)
double	assigned_contaminants_intensity_ratio	(intensity of contaminants in assigned/ intensity of peptides in assigned)
double	assigned_contaminants_ratio	(#contaminants in assigned/ #peptides in assigned)
pair< Int64, Int64 >	empty_features	(features without peptideidentification or with peptideidentifications but without hits; all features)
double	unassigned_contaminants_ratio	(#contaminants in unassigned/ #peptides in unassigned)