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OpenMS
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This is the complete list of members for ConsensusXMLHandler, including all inherited members.
| accession_to_id_ | ConsensusXMLHandler | protected |
| act_cons_element_ | ConsensusXMLHandler | protected |
| ActionMode enum name | XMLHandler | |
| addProteinGroups_(MetaInfoInterface &meta, const std::vector< ProteinIdentification::ProteinGroup > &groups, const String &group_name, const std::unordered_map< std::string, UInt > &accession_to_id, const String &runid, XMLHandler::ActionMode mode) | ConsensusXMLHandler | protected |
| asBool_(const String &in) const | XMLHandler | inlineprotected |
| asDateTime_(String date_string) const | XMLHandler | inlineprotected |
| asDouble_(const String &in) const | XMLHandler | inlineprotected |
| asFloat_(const String &in) const | XMLHandler | inlineprotected |
| asInt_(const String &in) const | XMLHandler | inlineprotected |
| asInt_(const XMLCh *in) const | XMLHandler | inlineprotected |
| asUInt_(const String &in) const | XMLHandler | inlineprotected |
| attributeAsDouble_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
| attributeAsDouble_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
| attributeAsDoubleList_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
| attributeAsDoubleList_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
| attributeAsInt_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
| attributeAsInt_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
| attributeAsIntList_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
| attributeAsIntList_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
| attributeAsString_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
| attributeAsString_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
| attributeAsStringList_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
| attributeAsStringList_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
| cconsensus_map_ | ConsensusXMLHandler | protected |
| characters(const XMLCh *const chars, const XMLSize_t length) override | ConsensusXMLHandler | protected |
| checkUniqueIdentifiers_(const std::vector< ProteinIdentification > &prot_ids) const | XMLHandler | |
| CMD enum value | ProgressLogger | |
| consensus_map_ | ConsensusXMLHandler | protected |
| ConsensusXMLHandler(ConsensusMap &map, const String &filename) | ConsensusXMLHandler | |
| ConsensusXMLHandler(const ConsensusMap &map, const String &filename) | ConsensusXMLHandler | |
| current_logger_ | ProgressLogger | mutableprotected |
| cv_terms_ | XMLHandler | protected |
| cvParamToValue(const ControlledVocabulary &cv, const String &parent_tag, const String &accession, const String &name, const String &value, const String &unit_accession) const | XMLHandler | |
| cvParamToValue(const ControlledVocabulary &cv, const CVTerm &raw_term) const | XMLHandler | |
| cvStringToEnum_(const Size section, const String &term, const char *message, const SignedSize result_on_error=0) | XMLHandler | protected |
| endElement(const XMLCh *const, const XMLCh *const, const XMLCh *const qname) override | ConsensusXMLHandler | protected |
| endProgress(UInt64 bytes_processed=0) const | ProgressLogger | |
| equal_(const XMLCh *a, const XMLCh *b) const | XMLHandler | inlineprotected |
| error(const xercesc::SAXParseException &exception) override | XMLHandler | |
| error(ActionMode mode, const String &msg, UInt line=0, UInt column=0) const | XMLHandler | |
| expectList_(const String &str) const | XMLHandler | inlineprivate |
| fatalError(const xercesc::SAXParseException &exception) override | XMLHandler | |
| fatalError(ActionMode mode, const String &msg, UInt line=0, UInt column=0) const | XMLHandler | |
| file_ | XMLHandler | protected |
| fromXSDString(const String &type, const String &value) | XMLHandler | inlinestatic |
| getLoadDetail() const | XMLHandler | virtual |
| getLogType() const | ProgressLogger | |
| getOptions() | ConsensusXMLHandler | |
| getOptions() const | ConsensusXMLHandler | |
| getProteinGroups_(std::vector< ProteinIdentification::ProteinGroup > &groups, const String &group_name) | ConsensusXMLHandler | protected |
| GUI enum value | ProgressLogger | |
| id_identifier_ | ConsensusXMLHandler | protected |
| identifier_id_ | ConsensusXMLHandler | protected |
| it_ | ConsensusXMLHandler | protected |
| last_invoke_ | ProgressLogger | mutableprotected |
| last_meta_ | ConsensusXMLHandler | protected |
| LD_ALLDATA enum value | XMLHandler | |
| LD_COUNTS_WITHOPTIONS enum value | XMLHandler | |
| LD_RAWCOUNTS enum value | XMLHandler | |
| LOAD enum value | XMLHandler | |
| load_detail_ | XMLHandler | protected |
| LOADDETAIL enum name | XMLHandler | |
| LogType enum name | ProgressLogger | |
| nextProgress() const | ProgressLogger | |
| NONE enum value | ProgressLogger | |
| open_tags_ | XMLHandler | protected |
| operator=(const ProgressLogger &other) | ProgressLogger | |
| optionalAttributeAsDouble_(double &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
| optionalAttributeAsDouble_(double &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
| optionalAttributeAsDoubleList_(DoubleList &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
| optionalAttributeAsDoubleList_(DoubleList &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
| optionalAttributeAsInt_(Int &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
| optionalAttributeAsInt_(Int &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
| optionalAttributeAsIntList_(IntList &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
| optionalAttributeAsIntList_(IntList &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
| optionalAttributeAsString_(String &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
| optionalAttributeAsString_(String &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
| optionalAttributeAsStringList_(StringList &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
| optionalAttributeAsStringList_(StringList &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
| optionalAttributeAsUInt_(UInt &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
| optionalAttributeAsUInt_(UInt &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
| options_ | ConsensusXMLHandler | protected |
| pep_hit_ | ConsensusXMLHandler | protected |
| pep_id_ | ConsensusXMLHandler | protected |
| peptide_evidences_ | ConsensusXMLHandler | protected |
| pos_ | ConsensusXMLHandler | protected |
| progress_ | ConsensusXMLHandler | protected |
| ProgressLogger() | ProgressLogger | |
| ProgressLogger(const ProgressLogger &other) | ProgressLogger | |
| prot_hit_ | ConsensusXMLHandler | protected |
| prot_id_ | ConsensusXMLHandler | protected |
| proteinid_to_accession_ | ConsensusXMLHandler | protected |
| recursion_depth_ | ProgressLogger | protectedstatic |
| reset() | XMLHandler | |
| search_param_ | ConsensusXMLHandler | protected |
| setLoadDetail(const LOADDETAIL d) | XMLHandler | virtual |
| setLogger(ProgressLoggerImpl *logger) | ProgressLogger | |
| setLogType(LogType type) const | ProgressLogger | |
| setOptions(const PeakFileOptions &) | ConsensusXMLHandler | |
| setProgress(SignedSize value) const | ProgressLogger | |
| sm_ | XMLHandler | protected |
| startElement(const XMLCh *const, const XMLCh *const, const XMLCh *const qname, const xercesc::Attributes &attributes) override | ConsensusXMLHandler | protected |
| startProgress(SignedSize begin, SignedSize end, const String &label) const | ProgressLogger | |
| STORE enum value | XMLHandler | |
| type_ | ProgressLogger | mutableprotected |
| version_ | XMLHandler | protected |
| warning(const xercesc::SAXParseException &exception) override | XMLHandler | |
| warning(ActionMode mode, const String &msg, UInt line=0, UInt column=0) const | XMLHandler | |
| writePeptideIdentification_(const String &filename, std::ostream &os, const PeptideIdentification &id, const String &tag_name, UInt indentation_level) | ConsensusXMLHandler | protected |
| writeTo(std::ostream &os) override | ConsensusXMLHandler | virtual |
| writeUserParam_(const String &tag_name, std::ostream &os, const MetaInfoInterface &meta, UInt indent) const | XMLHandler | protected |
| writeXMLEscape(const String &to_escape) | XMLHandler | inlinestatic |
| XMLHandler(const String &filename, const String &version) | XMLHandler | |
| XMLHandler() | XMLHandler | private |
| ~ConsensusXMLHandler() override | ConsensusXMLHandler | |
| ~ProgressLogger() | ProgressLogger | virtual |
| ~XMLHandler() override | XMLHandler |
1.9.1 
