OpenMS
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FLASHDeconv feature level output *.tsv, *.ms1ft (for Promex), *.feature (for TopPIC) file formats. More...
#include <OpenMS/FORMAT/FLASHDeconvFeatureFile.h>
Static Public Member Functions | |
static void | writeHeader (std::fstream &fs) |
write header line for regular file output More... | |
static void | writePromexHeader (std::fstream &fs) |
write header line for promex file output More... | |
static void | writeTopFDFeatureHeader (std::vector< std::fstream > &fs) |
write header line for topFD feature files More... | |
static void | writeFeatures (const std::vector< FLASHDeconvHelperStructs::MassFeature > &mass_features, const String &file_name, std::fstream &fs) |
write the features in regular file output More... | |
static void | writeTopFDFeatures (const std::vector< FLASHDeconvHelperStructs::MassFeature > &mass_features, const std::map< int, PeakGroup > &precursor_peak_groups, const std::map< int, double > &scan_rt_map, const String &file_name, std::vector< std::fstream > &fs) |
Find mass features and write features in TopFD format files. More... | |
static void | writePromexFeatures (const std::vector< FLASHDeconvHelperStructs::MassFeature > &mass_features, const std::map< int, PeakGroup > &precursor_peak_groups, const std::map< int, double > &scan_rt_map, const FLASHDeconvHelperStructs::PrecalculatedAveragine &avg, std::fstream &fs) |
Find mass features and write features in Promex format files. More... | |
FLASHDeconv feature level output *.tsv, *.ms1ft (for Promex), *.feature (for TopPIC) file formats.
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write the features in regular file output
Referenced by TOPPFLASHDeconv::main_().
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write header line for regular file output
Referenced by TOPPFLASHDeconv::main_().
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Find mass features and write features in Promex format files.
mass_features | mass features to be written |
precursor_peak_groups | precursor peak groups of MSn spectra that are used only when topfd_feature_out is set |
scan_rt_map | scan number to retention time map |
avg | averagine to determine isotope pattern range |
fs | file stream |
Referenced by TOPPFLASHDeconv::main_().
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static |
write header line for promex file output
Referenced by TOPPFLASHDeconv::main_().
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static |
write header line for topFD feature files
Referenced by TOPPFLASHDeconv::main_().
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static |
Find mass features and write features in TopFD format files.
mass_features | mass features to be written |
precursor_peak_groups | precursor peak groups of MSn spectra that are used only when topfd_feature_out is set |
scan_rt_map | scan number to retention time map |
file_name | input spectrum file name |
fs | file stream |
Referenced by TOPPFLASHDeconv::main_().