DBSuitability_friend Class Reference

#include <OpenMS/QC/DBSuitability.h>

Collaboration diagram for DBSuitability_friend:

Public Member Functions
	DBSuitability_friend ()=default
	~DBSuitability_friend ()=default
std::vector< FASTAFile::FASTAEntry >	getSubsampledFasta (const std::vector< FASTAFile::FASTAEntry > &fasta_data, double subsampling_rate)
void	appendDecoys (std::vector< FASTAFile::FASTAEntry > &fasta)
double	calculateCorrectionFactor (const DBSuitability::SuitabilityData &data, const DBSuitability::SuitabilityData &data_sampled, double sampling_rate)
UInt	numberOfUniqueProteins (const std::vector< PeptideIdentification > &peps, UInt number_of_hits=1)
Size	getIndexWithMedianNovoHits (const std::vector< DBSuitability::SuitabilityData > &data)
double	getScoreMatchingFDR (const std::vector< PeptideIdentification > &pep_ids, double FDR, String score_name, bool higher_score_better)

Private Attributes
DBSuitability	suit_

Constructor & Destructor Documentation

DBSuitability_friend()

DBSuitability_friend ( )

default

~DBSuitability_friend()

~DBSuitability_friend ( )

default

Member Function Documentation

appendDecoys()

void appendDecoys ( std::vector< FASTAFile::FASTAEntry > &  fasta )

inline

References DBSuitability::appendDecoys_(), and DBSuitability_friend::suit_.

calculateCorrectionFactor()

double calculateCorrectionFactor ( const DBSuitability::SuitabilityData &  data, const DBSuitability::SuitabilityData &  data_sampled, double  sampling_rate  )

inline

References DBSuitability::calculateCorrectionFactor_(), and DBSuitability_friend::suit_.

getIndexWithMedianNovoHits()

Size getIndexWithMedianNovoHits ( const std::vector< DBSuitability::SuitabilityData > &  data )

inline

References DBSuitability::getIndexWithMedianNovoHits_(), and DBSuitability_friend::suit_.

getScoreMatchingFDR()

double getScoreMatchingFDR ( const std::vector< PeptideIdentification > &  pep_ids, double  FDR, String  score_name, bool  higher_score_better  )

inline

References DBSuitability::getScoreMatchingFDR_(), and DBSuitability_friend::suit_.

getSubsampledFasta()

std::vector<FASTAFile::FASTAEntry> getSubsampledFasta ( const std::vector< FASTAFile::FASTAEntry > &  fasta_data, double  subsampling_rate  )

inline

References DBSuitability::getSubsampledFasta_(), and DBSuitability_friend::suit_.

numberOfUniqueProteins()

UInt numberOfUniqueProteins ( const std::vector< PeptideIdentification > &  peps, UInt  number_of_hits = 1  )

inline

References DBSuitability::numberOfUniqueProteins_(), and DBSuitability_friend::suit_.

Member Data Documentation

suit_

DBSuitability suit_

private

Referenced by DBSuitability_friend::appendDecoys(), DBSuitability_friend::calculateCorrectionFactor(), DBSuitability_friend::getIndexWithMedianNovoHits(), DBSuitability_friend::getScoreMatchingFDR(), DBSuitability_friend::getSubsampledFasta(), and DBSuitability_friend::numberOfUniqueProteins().