OpenMS
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#include <OpenMS/APPLICATIONS/TOPPBase.h>
#include <OpenMS/CHEMISTRY/ModificationsDB.h>
#include <OpenMS/CONCEPT/LogStream.h>
#include <OpenMS/KERNEL/BinnedSpectrum.h>
#include <OpenMS/COMPARISON/SpectraSTSimilarityScore.h>
#include <OpenMS/COMPARISON/ZhangSimilarityScore.h>
#include <OpenMS/FORMAT/FileHandler.h>
#include <OpenMS/FORMAT/MSPFile.h>
#include <OpenMS/KERNEL/MSExperiment.h>
#include <OpenMS/MATH/MathFunctions.h>
#include <OpenMS/METADATA/PeptideIdentification.h>
#include <ctime>
#include <vector>
#include <map>
#include <cmath>