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OpenMS
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#include <OpenMS/APPLICATIONS/TOPPBase.h>#include <OpenMS/CHEMISTRY/ModificationsDB.h>#include <OpenMS/CONCEPT/LogStream.h>#include <OpenMS/KERNEL/BinnedSpectrum.h>#include <OpenMS/COMPARISON/SpectraSTSimilarityScore.h>#include <OpenMS/COMPARISON/ZhangSimilarityScore.h>#include <OpenMS/FORMAT/FileHandler.h>#include <OpenMS/FORMAT/MSPFile.h>#include <OpenMS/KERNEL/MSExperiment.h>#include <OpenMS/MATH/MathFunctions.h>#include <OpenMS/METADATA/PeptideIdentification.h>#include <ctime>#include <vector>#include <map>#include <cmath>