IndexedMzMLDecoder.h

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// Copyright (c) 2002-present, The OpenMS Team -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
// 
// --------------------------------------------------------------------------
// $Maintainer: Hannes Roest $
// $Authors: Hannes Roest $
// --------------------------------------------------------------------------
 
#pragma once
 
#include <OpenMS/config.h>
#include <OpenMS/CONCEPT/Types.h>
#include <OpenMS/CONCEPT/Exception.h>
#include <OpenMS/DATASTRUCTURES/String.h>
 
namespace OpenMS 
{
 
  class OPENMS_DLLAPI IndexedMzMLDecoder
  {
  public:
 
    typedef std::vector< std::pair<std::string, std::streampos> > OffsetVector;
 
    int parseOffsets(const String& filename, std::streampos indexoffset, OffsetVector& spectra_offsets, OffsetVector& chromatograms_offsets);
 
    std::streampos findIndexListOffset(const String& filename, int buffersize = 1023);
 
  protected:
 
    int domParseIndexedEnd_(const std::string& in, OffsetVector & spectra_offsets, OffsetVector& chromatograms_offsets);
  };
 
}