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OpenMS
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#include <OpenMS/APPLICATIONS/TOPPBase.h>#include <OpenMS/CHEMISTRY/AASequence.h>#include <OpenMS/CHEMISTRY/ModificationsDB.h>#include <OpenMS/CHEMISTRY/ProteaseDB.h>#include <OpenMS/CHEMISTRY/ProteaseDigestion.h>#include <OpenMS/FORMAT/FASTAFile.h>#include <OpenMS/FORMAT/FileHandler.h>#include <OpenMS/ANALYSIS/ID/IDRipper.h>#include <OpenMS/ANALYSIS/ID/IDScoreSwitcherAlgorithm.h>#include <OpenMS/PROCESSING/ID/IDFilter.h>#include <OpenMS/METADATA/PeptideIdentification.h>#include <OpenMS/SYSTEM/File.h>#include <limits>