FalseDiscoveryRate.h File Reference

#include <OpenMS/DATASTRUCTURES/DefaultParamHandler.h>
#include <OpenMS/METADATA/ID/IdentificationData.h>
#include <OpenMS/METADATA/PeptideIdentification.h>
#include <OpenMS/METADATA/ProteinIdentification.h>
#include <OpenMS/KERNEL/ConsensusMap.h>
#include <unordered_map>
#include <vector>
#include <unordered_set>

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Classes
class	FalseDiscoveryRate
	Calculates false discovery rates (FDR) from identifications. More...
class	FalseDiscoveryRate::DecoyStringHelper
	Finds decoy strings in ProteinIdentification runs. More...
struct	FalseDiscoveryRate::DecoyStringHelper::Result
	Finds the most common decoy string in the accessions of proteins. Checks for suffix and prefix and some common decoy strings. Only successful if more than 30% had a common string. More...

Namespaces
	OpenMS
	Main OpenMS namespace.

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Class Documentation

OpenMS::FalseDiscoveryRate::DecoyStringHelper::Result

struct OpenMS::FalseDiscoveryRate::DecoyStringHelper::Result

Finds the most common decoy string in the accessions of proteins. Checks for suffix and prefix and some common decoy strings. Only successful if more than 30% had a common string.

A result of the findDecoyString function

Parameters

proteins

Input proteins with accessions

Returns

A

Collaboration diagram for FalseDiscoveryRate::DecoyStringHelper::Result:

Class Members
bool	is_prefix	on success, was it a prefix or suffix
String	name	on success, what was the decoy string?
bool	success	did more than 30% of proteins have the same prefix or suffix