OpenMS
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#include <OpenMS/APPLICATIONS/TOPPBase.h>
#include <OpenMS/PROCESSING/ID/IDFilter.h>
#include <OpenMS/FORMAT/ExperimentalDesignFile.h>
#include <OpenMS/FORMAT/FileHandler.h>
#include <OpenMS/FORMAT/FileTypes.h>
#include <OpenMS/METADATA/ExperimentalDesign.h>
#include <OpenMS/SYSTEM/File.h>
#include <OpenMS/SYSTEM/StopWatch.h>
#include <OpenMS/ANALYSIS/ID/BayesianProteinInferenceAlgorithm.h>
#include <OpenMS/ANALYSIS/ID/ConsensusMapMergerAlgorithm.h>
#include <OpenMS/ANALYSIS/ID/FalseDiscoveryRate.h>
#include <OpenMS/ANALYSIS/ID/IDMergerAlgorithm.h>
#include <OpenMS/ANALYSIS/ID/PeptideProteinResolution.h>
#include <OpenMS/ANALYSIS/ID/IDScoreSwitcherAlgorithm.h>
#include <vector>