PosteriorErrorProbabilityModel Member List

This is the complete list of members for PosteriorErrorProbabilityModel, including all inherited members.

check_defaults_	DefaultParamHandler	protected
computeLLAndIncorrectPosteriorsFromLogDensities(const std::vector< double > &incorrect_log_density, const std::vector< double > &correct_log_density, std::vector< double > &incorrect_posterior) const	PosteriorErrorProbabilityModel
computeLogLikelihood(const std::vector< double > &incorrect_density, const std::vector< double > &correct_density) const	PosteriorErrorProbabilityModel
computeProbability(double score) const	PosteriorErrorProbabilityModel
correctly_assigned_fit_param_	PosteriorErrorProbabilityModel	private
DefaultParamHandler(const String &name)	DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)	DefaultParamHandler
DefaultParamHandler()	DefaultParamHandler	private
defaults_	DefaultParamHandler	protected
defaultsToParam_()	DefaultParamHandler	protected
error_name_	DefaultParamHandler	protected
extractAndTransformScores(const std::vector< ProteinIdentification > &protein_ids, const std::vector< PeptideIdentification > &peptide_ids, const bool split_charge, const bool top_hits_only, const bool target_decoy_available, const double fdr_for_targets_smaller)	PosteriorErrorProbabilityModel	static
fillDensities(const std::vector< double > &x_scores, std::vector< double > &incorrect_density, std::vector< double > &correct_density)	PosteriorErrorProbabilityModel
fillLogDensities(const std::vector< double > &x_scores, std::vector< double > &incorrect_density, std::vector< double > &correct_density)	PosteriorErrorProbabilityModel
fillLogDensitiesGumbel(const std::vector< double > &x_scores, std::vector< double > &incorrect_density, std::vector< double > &correct_density)	PosteriorErrorProbabilityModel
fit(std::vector< double > &search_engine_scores, const String &outlier_handling)	PosteriorErrorProbabilityModel
fit(std::vector< double > &search_engine_scores, std::vector< double > &probabilities, const String &outlier_handling)	PosteriorErrorProbabilityModel
fitGumbelGauss(std::vector< double > &search_engine_scores, const String &outlier_handling)	PosteriorErrorProbabilityModel
getBothGnuplotFormula(const GaussFitter::GaussFitResult &incorrect, const GaussFitter::GaussFitResult &correct) const	PosteriorErrorProbabilityModel
getCorrectlyAssignedFitResult() const	PosteriorErrorProbabilityModel	inline
getDefaults() const	DefaultParamHandler
getGaussGnuplotFormula(const GaussFitter::GaussFitResult &params) const	PosteriorErrorProbabilityModel
getGumbel_(double x, const GaussFitter::GaussFitResult &params)	PosteriorErrorProbabilityModel	inlinestatic
getGumbelGnuplotFormula(const GaussFitter::GaussFitResult &params) const	PosteriorErrorProbabilityModel
getIncorrectlyAssignedFitResult() const	PosteriorErrorProbabilityModel	inline
getIncorrectlyAssignedGumbelFitResult() const	PosteriorErrorProbabilityModel	inline
getName() const	DefaultParamHandler
getNegativeGnuplotFormula_	PosteriorErrorProbabilityModel	private
getNegativePrior() const	PosteriorErrorProbabilityModel	inline
getParameters() const	DefaultParamHandler
getPositiveGnuplotFormula_	PosteriorErrorProbabilityModel	private
getScore_(const std::vector< String > &requested_score_types, const PeptideHit &hit, const String &actual_score_type)	PosteriorErrorProbabilityModel	privatestatic
getSmallestScore() const	PosteriorErrorProbabilityModel	inline
getSubsections() const	DefaultParamHandler
incorrectly_assigned_fit_gumbel_param_	PosteriorErrorProbabilityModel	private
incorrectly_assigned_fit_param_	PosteriorErrorProbabilityModel	private
initPlots(std::vector< double > &x_scores)	PosteriorErrorProbabilityModel
max_correctly_	PosteriorErrorProbabilityModel	private
max_incorrectly_	PosteriorErrorProbabilityModel	private
negative_prior_	PosteriorErrorProbabilityModel	private
operator=(const PosteriorErrorProbabilityModel &rhs)	PosteriorErrorProbabilityModel	private
OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs)	DefaultParamHandler
operator==(const DefaultParamHandler &rhs) const	DefaultParamHandler	virtual
param_	DefaultParamHandler	protected
plotTargetDecoyEstimation(std::vector< double > &target, std::vector< double > &decoy)	PosteriorErrorProbabilityModel
pos_neg_mean_weighted_posteriors(const std::vector< double > &x_scores, const std::vector< double > &incorrect_posteriors)	PosteriorErrorProbabilityModel
pos_neg_sigma_weighted_posteriors(const std::vector< double > &x_scores, const std::vector< double > &incorrect_posteriors, const std::pair< double, double > &pos_neg_mean)	PosteriorErrorProbabilityModel
PosteriorErrorProbabilityModel()	PosteriorErrorProbabilityModel
PosteriorErrorProbabilityModel(const PosteriorErrorProbabilityModel &rhs)	PosteriorErrorProbabilityModel	private
processOutliers_(std::vector< double > &x_scores, const String &outlier_handling) const	PosteriorErrorProbabilityModel	private
setName(const String &name)	DefaultParamHandler
setParameters(const Param &param)	DefaultParamHandler
smallest_score_	PosteriorErrorProbabilityModel	private
subsections_	DefaultParamHandler	protected
transformScore_(const String &engine, const PeptideHit &hit, const String &current_score_type)	PosteriorErrorProbabilityModel	privatestatic
tryGnuplot(const String &gp_file)	PosteriorErrorProbabilityModel
updateMembers_()	DefaultParamHandler	protectedvirtual
updateScores(const PosteriorErrorProbabilityModel &PEP_model, const String &search_engine, const Int charge, const bool prob_correct, const bool split_charge, std::vector< ProteinIdentification > &protein_ids, std::vector< PeptideIdentification > &peptide_ids, bool &unable_to_fit_data, bool &data_might_not_be_well_fit)	PosteriorErrorProbabilityModel	static
warn_empty_defaults_	DefaultParamHandler	protected
writeParametersToMetaValues(const Param &write_this, MetaInfoInterface &write_here, const String &key_prefix="")	DefaultParamHandler	static
~DefaultParamHandler()	DefaultParamHandler	virtual
~PosteriorErrorProbabilityModel() override	PosteriorErrorProbabilityModel