DIAScoring Member List

This is the complete list of members for DIAScoring, including all inherited members.

check_defaults_	DefaultParamHandler	protected
DefaultParamHandler(const String &name)	DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)	DefaultParamHandler
DefaultParamHandler()	DefaultParamHandler	private
defaults_	DefaultParamHandler	protected
defaultsToParam_()	DefaultParamHandler	protected
dia_by_ion_score(const SpectrumSequence &spectrum, AASequence &sequence, int charge, const RangeMobility &im_range, double &bseries_score, double &yseries_score) const	DIAScoring
dia_byseries_intensity_min_	DIAScoring	private
dia_byseries_ppm_diff_	DIAScoring	private
dia_centroided_	DIAScoring	private
dia_extract_window_	DIAScoring	private
dia_extraction_ppm_	DIAScoring	private
dia_isotope_scores(const std::vector< TransitionType > &transitions, SpectrumSequence &spectrum, OpenSwath::IMRMFeature *mrmfeature, const RangeMobility &im_range, double &isotope_corr, double &isotope_overlap) const	DIAScoring
dia_massdiff_score(const std::vector< TransitionType > &transitions, const SpectrumSequence &spectrum, const std::vector< double > &normalized_library_intensity, const RangeMobility &im_range, double &ppm_score, double &ppm_score_weighted, std::vector< double > &diff_ppm) const	DIAScoring
dia_ms1_isotope_scores(double precursor_mz, const std::vector< SpectrumPtrType > &spectrum, RangeMobility &im_range, double &isotope_corr, double &isotope_overlap, const EmpiricalFormula &sum_formula) const	DIAScoring
dia_ms1_isotope_scores_averagine(double precursor_mz, const SpectrumSequence &spectrum, int charge_state, RangeMobility &im_range, double &isotope_corr, double &isotope_overlap) const	DIAScoring
dia_ms1_massdiff_score(double precursor_mz, const SpectrumSequence &spectrum, const RangeMobility &im_range, double &ppm_score) const	DIAScoring
dia_nr_charges_	DIAScoring	private
dia_nr_isotopes_	DIAScoring	private
diaIsotopeScoresSub_(const std::vector< TransitionType > &transitions, const SpectrumSequence &spectrum, std::map< std::string, double > &intensities, const RangeMobility &im_range, double &isotope_corr, double &isotope_overlap) const	DIAScoring	private
DIAScoring()	DIAScoring
DIAScoring(const DIAScoring &rhs)	DIAScoring	private
error_name_	DefaultParamHandler	protected
generator	DIAScoring	private
getDefaults() const	DefaultParamHandler
getFirstIsotopeRelativeIntensities_(const std::vector< TransitionType > &transitions, OpenSwath::IMRMFeature *mrmfeature, std::map< std::string, double > &intensities) const	DIAScoring	private
getIsotopeIntysFromExpSpec_(double precursor_mz, const SpectrumSequence &spectrum, int charge_state, const RangeMobility &im_range, std::vector< double > &isotopes_int) const	DIAScoring	private
getName() const	DefaultParamHandler
getParameters() const	DefaultParamHandler
getSubsections() const	DefaultParamHandler
largePeaksBeforeFirstIsotope_(const SpectrumSequence &spectrum, double mono_mz, double mono_int, int &nr_occurrences, double &max_ratio, const RangeMobility &im_range) const	DIAScoring	private
operator=(const DIAScoring &rhs)	DIAScoring	private
OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs)	DefaultParamHandler
operator==(const DefaultParamHandler &rhs) const	DefaultParamHandler	virtual
param_	DefaultParamHandler	protected
peak_before_mono_max_ppm_diff_	DIAScoring	private
score_with_isotopes(SpectrumSequence &spectrum, const std::vector< TransitionType > &transitions, const RangeMobility &im_range, double &dotprod, double &manhattan) const	DIAScoring
scoreIsotopePattern_(const std::vector< double > &isotopes_int, double product_mz, int putative_fragment_charge) const	DIAScoring	private
scoreIsotopePattern_(const std::vector< double > &isotopes_int, const EmpiricalFormula &sum_formula) const	DIAScoring	private
scoreIsotopePattern_(const std::vector< double > &isotopes_int, const IsotopeDistribution &isotope_dist) const	DIAScoring	private
setName(const String &name)	DefaultParamHandler
setParameters(const Param &param)	DefaultParamHandler
SpectrumPtrType typedef	DIAScoring	private
subsections_	DefaultParamHandler	protected
TransitionType typedef	DIAScoring	private
updateMembers_() override	DIAScoring	privatevirtual
warn_empty_defaults_	DefaultParamHandler	protected
writeParametersToMetaValues(const Param &write_this, MetaInfoInterface &write_here, const String &key_prefix="")	DefaultParamHandler	static
~DefaultParamHandler()	DefaultParamHandler	virtual
~DIAScoring() override	DIAScoring