35 static const std::string score_type_names[SIZE_OF_SCORETYPE];
45 std::vector<PeptideIdentification>& peptides,
Representation of a peptide/protein sequence.
Definition: AASequence.h:86
Class for reading Percolator tab-delimited output files.
Definition: PercolatorOutfile.h:27
PercolatorOutfile()
Constructor.
void getPeptideSequence_(String peptide, AASequence &seq) const
Converts the peptide string to an 'AASequence' instance.
void load(const String &filename, ProteinIdentification &proteins, std::vector< PeptideIdentification > &peptides, SpectrumMetaDataLookup &lookup, enum ScoreType output_score=QVALUE)
Loads a Percolator output file.
void resolveMisassignedNTermMods_(String &peptide) const
Resolve cases where N-terminal modifications may be misassigned to the first residue (for X!...
ScoreType
Types of Percolator scores.
Definition: PercolatorOutfile.h:32
@ POSTERRPROB
Definition: PercolatorOutfile.h:32
Representation of a protein identification run.
Definition: ProteinIdentification.h:50
A more convenient string class.
Definition: String.h:34
Main OpenMS namespace.
Definition: openswathalgo/include/OpenMS/OPENSWATHALGO/DATAACCESS/ISpectrumAccess.h:19