OpenMS
AbsoluteQuantitationMethodFile.h
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1 // Copyright (c) 2002-present, The OpenMS Team -- EKU Tuebingen, ETH Zurich, and FU Berlin
2 // SPDX-License-Identifier: BSD-3-Clause
3 //
4 // --------------------------------------------------------------------------
5 // $Maintainer: Douglas McCloskey, Pasquale Domenico Colaianni $
6 // $Authors: Douglas McCloskey, Pasquale Domenico Colaianni $
7 // --------------------------------------------------------------------------
8 
9 #pragma once
10 
12 #include <OpenMS/FORMAT/CsvFile.h>
13 #include <map>
14 
15 namespace OpenMS
16 {
24  class OPENMS_DLLAPI AbsoluteQuantitationMethodFile :
25  private CsvFile
26  {
27 public:
31  ~AbsoluteQuantitationMethodFile() override = default;
32 
42  void load(const String & filename, std::vector<AbsoluteQuantitationMethod> & aqm_list);
43 
52  void store(const String & filename, const std::vector<AbsoluteQuantitationMethod> & aqm_list);
53 
54 protected:
62  void parseLine_(
63  const StringList & line,
64  const std::map<String, Size> & headers,
66  ) const;
67 
76  void setCastValue_(const String& key, const String& value, Param& params) const;
77 
78  };
79 
80 } // namespace OpenMS
81 
File adapter for AbsoluteQuantitationMethod files.
Definition: AbsoluteQuantitationMethodFile.h:26
void load(const String &filename, std::vector< AbsoluteQuantitationMethod > &aqm_list)
Loads an AbsoluteQuantitationMethod file.
void parseLine_(const StringList &line, const std::map< String, Size > &headers, AbsoluteQuantitationMethod &aqm) const
Parses a line into the members of AbsoluteQuantitationMethod.
~AbsoluteQuantitationMethodFile() override=default
Destructor.
AbsoluteQuantitationMethodFile()=default
Default constructor.
void setCastValue_(const String &key, const String &value, Param &params) const
Helper method which takes care of converting the given value to the desired type, based on the header...
void store(const String &filename, const std::vector< AbsoluteQuantitationMethod > &aqm_list)
Stores an AbsoluteQuantitationMethod file.
AbsoluteQuantitationMethod is a class to hold information about the quantitation method and for apply...
Definition: AbsoluteQuantitationMethod.h:27
This class handles csv files. Currently only loading is implemented. Does NOT support comment lines!
Definition: CsvFile.h:25
Management and storage of parameters / INI files.
Definition: Param.h:44
A more convenient string class.
Definition: String.h:34
std::vector< String > StringList
Vector of String.
Definition: ListUtils.h:44
Main OpenMS namespace.
Definition: openswathalgo/include/OpenMS/OPENSWATHALGO/DATAACCESS/ISpectrumAccess.h:19